Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2377 ATGGGAGTGTTCGCTGGAACCACCGCTGCTGCTTGTGTCACATCCTCTCTCGCACTCACACCAACAACACCATTCTCTTCTAACAAGAGAACAACCATCACCACTTCATCCTCCAAATGCAGAATTCGAGCCACCCATCACCAAAACCTCACTGCATTTCCCTCAACATCCCATCTTTTCTACGCTAAATCCCTCCGCACCACCAAACCCCGCATTTTCCTTCCACACTTAATTGCTTCTCTGGTTGACCAAACTTACATAATGGTGAAGCCTGATGGCGTGCAGCGTGGCGTTGTGGGAGATATTATCTCTAGGTTTGAGAAGAAAGGGTTTAAGTTAACTGGCTTGAAGCTCTACCAGTGCTCAAAAGATTTAGCTGAGGAGCATTACAAGGACTTAAAACTAAAGTCATTCTTCCCTAAGCTGATTGACTATATTACTTCTGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGTGTAGTGGCATCAGCACGCAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCTGGCACAATAAGAGGAGACCTTGCTGTTCAAACAGGAAGGAATATTGTTCACGGCAGTGACAGCCCTGAGAATGGCAAGCGTGAAATAGCTCTCTGGTTCAAGGAAGGTGAATTATGCGAATGGACTCCTGTTCTAACACCATGGCTAAGAGAATAG 693 0.4646 MGVFAGTTAAACVTSSLALTPTTPFSSNKRTTITTSSSKCRIRATHHQNLTAFPSTSHLFYAKSLRTTKPRIFLPHLIASLVDQTYIMVKPDGVQRGVVGDIISRFEKKGFKLTGLKLYQCSKDLAEEHYKDLKLKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIALWFKEGELCEWTPVLTPWLRE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2377 230 PRINTS Nucleoside diphosphate kinase signature 129 148 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g2377 230 PRINTS Nucleoside diphosphate kinase signature 85 107 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g2377 230 PRINTS Nucleoside diphosphate kinase signature 149 166 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g2377 230 PRINTS Nucleoside diphosphate kinase signature 170 186 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g2377 230 PRINTS Nucleoside diphosphate kinase signature 193 212 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g2377 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 31 230 - -
Lja4g2377 230 SMART ndk_5 82 219 IPR034907 -
Lja4g2377 230 Hamap Nucleoside diphosphate kinase [ndk]. 82 217 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja4g2377 230 Gene3D - 79 230 IPR036850 -
Lja4g2377 230 SUPERFAMILY Nucleoside diphosphate kinase, NDK 82 228 IPR036850 -
Lja4g2377 230 CDD NDPk_I 84 212 - -
Lja4g2377 230 ProSitePatterns Nucleoside diphosphate kinases active site. 193 201 IPR023005 -
Lja4g2377 230 Pfam Nucleoside diphosphate kinase 84 216 IPR034907 -
Lja4g2377 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 31 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2377 Lja-Chr4 26586722 26591053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2377 K00940 - gmx:100500478 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2377 4 26586722 26591053 Lja4g2377 4 26586722 26591053 ECH
Lja4g2377 4 26586722 26591053 Lja2g0955 2 8996679 9002330 PCT