LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g2360	ATGGGAACAAAGAACCTCTTCTGGTTTGCTCTGCTATCCCTTGCTCTGTTTCTCAGTGTGGCAGAGAGCTTTGATTTCAATGAGAAGGATTTGGAATCTGAAGAAAGCTTGTGGGATTTGTATGAAAGATGGAGAAGCGTCCACACGGTTTCTCGAAGCCTAGACGAGAAGCGCAAGCGCTTCAATGTGTTCAAAGCCAATGTGATGCATGTCCATGACACCAATAAATTGGACATGCCTTACAAGCTCGAGTTGAACAAATTTGCTGACATGACCAACCATGAATTCAGAAGCATCTATGCTTCCTCCAAGATTGATCATCACAAAATGTTACGCGGCACACCACATGGGAAGGGAACCTTCATGTATGAGAATGTTGATAGTGTTCCTCCTTCTATAGATTGGAGGAAGAAAGGGGCTGTCACTGCTATAAAGGATCAAAGAGACTGCAGTAGTTGCTGGGCGTTTTCAGCCGTAGCTGCTGTTGAAGGTATTAACCAAATCAAGACACAAAAGCTAGTGTCATTGTCTGAGCAAGAGCTAGTAGATTGTGACATTGAACACAATAATGGATGCAATGGTGGGTACATGAATAATGCGTTCGACTTCATCAAGCAAAATGGCATAACAACCGAAAGTATTTACCCTTATACAGCAACAAATGGAACCTGTAATGTACAGAAGGAGAATGAACCAGCAGTGTCAATTGATGGCTATGAGAATGTTCCAGAGAATAATGAGACTGCATTGCTCCTAGCAGCTGCAAACCAACCTGTATCTGTAGCAGTTGAAGCAGGGGTTGATATGCAGTTATACTCAGAGGGAGTATTTATGGGAGGCGGAGTGGACTGTGGCACTCAATTGAATCATGGAGTAGCAATTGTGGGATATGGAGCAACTCAATATGGAACCAAATATTGGATAGTGAAAAACTCATGGGGAGCCAAATGGGGGGAAGAAGGTTACATAAGAATGAAAAGGGACATATCTGATAAGCGAGGTCTCTGTGGCATAGCGATGGCGCCTTCATATCCAATCAAAAGTTCCTCCATTGATTTCCTAGAGCCTTCACAATTTCTTATAGATGAAATTTAA	1095	0.4265	MGTKNLFWFALLSLALFLSVAESFDFNEKDLESEESLWDLYERWRSVHTVSRSLDEKRKRFNVFKANVMHVHDTNKLDMPYKLELNKFADMTNHEFRSIYASSKIDHHKMLRGTPHGKGTFMYENVDSVPPSIDWRKKGAVTAIKDQRDCSSCWAFSAVAAVEGINQIKTQKLVSLSEQELVDCDIEHNNGCNGGYMNNAFDFIKQNGITTESIYPYTATNGTCNVQKENEPAVSIDGYENVPENNETALLLAAANQPVSVAVEAGVDMQLYSEGVFMGGGVDCGTQLNHGVAIVGYGATQYGTKYWIVKNSWGAKWGEEGYIRMKRDISDKRGLCGIAMAPSYPIKSSSIDFLEPSQFLIDEI*	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g2360	364	PRINTS	Papain cysteine protease (C1) family signature	147	162	IPR000668	GO:0006508\|GO:0008234
	Lja4g2360	364	PRINTS	Papain cysteine protease (C1) family signature	290	300	IPR000668	GO:0006508\|GO:0008234
	Lja4g2360	364	PRINTS	Papain cysteine protease (C1) family signature	306	312	IPR000668	GO:0006508\|GO:0008234
	Lja4g2360	364	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	306	325	IPR025661	-
	Lja4g2360	364	SMART	pept_c1	129	346	IPR000668	GO:0006508\|GO:0008234
	Lja4g2360	364	SUPERFAMILY	Cysteine proteinases	35	347	IPR038765	-
	Lja4g2360	364	Pfam	Cathepsin propeptide inhibitor domain (I29)	41	96	IPR013201	-
	Lja4g2360	364	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	288	298	IPR025660	-
	Lja4g2360	364	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	21	353	-	-
	Lja4g2360	364	SMART	Inhibitor_I29_2	41	96	IPR013201	-
	Lja4g2360	364	CDD	Peptidase_C1A	130	345	IPR039417	-
	Lja4g2360	364	Gene3D	Cysteine proteinases	15	348	-	-
	Lja4g2360	364	PANTHER	KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1	21	353	-	-
	Lja4g2360	364	Pfam	Papain family cysteine protease	129	346	IPR000668	GO:0006508\|GO:0008234

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g2360	Lja-Chr4	26101771	26103664	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g2360	K16292		-	tcc:18605008	526.939

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g2360	4	26101771	26103664	Lja1g5294	1	81123402	81125779	PCT