Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5294 ATGAAAATGAAGAATCTCTTATGTGTTGCTCTGTCCCTTGCTTTGGTTCTTGGCCTAGCCAAGAGCTTCGATTTCCACGAGAGCGATGTGGGATCGGAGAAGAGCCTGTGGGACTTGTATGAGAGATGGAGGAGCCACCACACGGTTTCTCGGAGCCTCGATGACAAACACAAGCGCTTTAACGTGTTCAAAGCCAATGTGATGCATGTCCACAACACTAACAAAATGGACAAGCCTTACAAGCTGAAGCTGAATAAATTTGCAGACATGACCAACCATGAATTTAGGAGTGCCTATGCTGGATCAAAGGTTAATCACCACAGAATGTTCAGAGGAGCAACACGTGGGAATGGGAGCTTCATGTATGAGAAGATTAATAGAGTTCCTCCTTCTGTGGATTGGAGGAAGAAGGGTGCTGTCACTGATGTAAAGGATCAAGGCCAATGTGGAAGCTGCTGGGCGTTTTCAACTGTTGTAGCTGTTGAAGGCATTAACCAAATCAAGACAAATAAGCTGGTCTCATTGTCTGAGCAAGAGCTGGTGGATTGTGACACTAAAGAAAATGCTGGATGCAATGGTGGGCTGATGGAATATGCTTTTGAGTTCATCAAGCAAAAGGGAGGCATAACAACAGAAAACAATTACCCTTACAAAGCAAATGCCGGATCTTGTGATGCATCAAAGGAGAATGATCCAGTAGTTTCAATTGATGGCCATGAGACTGTTCCTGCTAACGACGAAGCCGCGTTGCTCAATGCTGTTGCCAACCAACCTGTATCTGTAGCTATAGATGCTGGTGGATCTGATTTCCAATTCTACTCAGAGGGGGTATTTACTGGCGATTGTGGCACGGGGCTTGATCATGGTGTAGCGGTTGTGGGATATGGAACAACTGTTGATGGAACTGACTACTGGATAGTGAAGAACTCTTGGGGGCCAGAATGGGGAGAACAGGGTTATATCAGAATGCAGAGGAACATATCTGACAAGGAGGGGCTATGTGGCATAGCTATGGAGGCTTCCTACCCAATCAAAAACTCCTCTGAGAATCCAAAACCACGTTCATCTCCTAAAGATGAGCTTTAA 1086 0.4549 MKMKNLLCVALSLALVLGLAKSFDFHESDVGSEKSLWDLYERWRSHHTVSRSLDDKHKRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSAYAGSKVNHHRMFRGATRGNGSFMYEKINRVPPSVDWRKKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVSLSEQELVDCDTKENAGCNGGLMEYAFEFIKQKGGITTENNYPYKANAGSCDASKENDPVVSIDGHETVPANDEAALLNAVANQPVSVAIDAGGSDFQFYSEGVFTGDCGTGLDHGVAVVGYGTTVDGTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIKNSSENPKPRSSPKDEL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5294 361 SMART Inhibitor_I29_2 40 95 IPR013201 -
Lja1g5294 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 351 - -
Lja1g5294 361 Gene3D Cysteine proteinases 15 346 - -
Lja1g5294 361 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Lja1g5294 361 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 351 - -
Lja1g5294 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Lja1g5294 361 SUPERFAMILY Cysteine proteinases 36 345 IPR038765 -
Lja1g5294 361 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Lja1g5294 361 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Lja1g5294 361 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Lja1g5294 361 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Lja1g5294 361 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Lja1g5294 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Lja1g5294 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Lja1g5294 361 CDD Peptidase_C1A 129 343 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5294 Lja-Chr1 81123402 81125779 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5294 K16292 - gmx:548011 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5294 1 81123402 81125779 Lja1g5294 1 81123402 81125779 ECH
Lja4g2360 4 26101771 26103664 Lja1g5294 1 81123402 81125779 PCT