Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2353 ATGGAGCAATACTGGTCTGGGAGTGCTGTCAATAGAAACAAAGGGATGGTGGAGAATTTGCAGCAATATGGAGTGATCAAGTCCAGAAAGGTAGCTGAAATAATGGAAACTATTGATAGAGGTTTGTTTGTGCCCAATGGAGCTCAACCTTATGTAGACAGCCCCATGCTGATTGGATACAATGCCACAATATCTGCACCACATATGCATGCCACCTGTCTTCAGCTGCTGGAGGAGAATTTGCAACCAGGAATGCGCGCTCTTGATGTTGGCTCTGGAACGGGGTATCTGACTGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCCGGACTGTTGGTGTGGAACATATTCCAGAGTTAGTATCTTTTTCAATCCAGAATATTGAAAAAAGTGCTGCAGCCCCACAATTGAAAGATGGATCCCTCTCTGTGTATGTTACTGATGGAAGGCAGGGTTGGCCGGAGTCTGCTCCTTATGATGCCATTCACGTTGGAGCTGCGGCACCAGAAATTCCCCAAGCACTTATTGACCAGTTGAAGCCGGGTGGTAGAATGGTTATACCCGTTGGAAACATATTTCAAGATTTAAAGGTTGTGGATAAGAACTCTGATGGTGCTATCAGTATCCGGACAGAGACTTCTGTTCGATATGTGCCTCTCACAAGCAAAGAAGCTCAACTGCAAGGTTAG 690 0.4623 MEQYWSGSAVNRNKGMVENLQQYGVIKSRKVAEIMETIDRGLFVPNGAQPYVDSPMLIGYNATISAPHMHATCLQLLEENLQPGMRALDVGSGTGYLTACFALMVGPQGRTVGVEHIPELVSFSIQNIEKSAAAPQLKDGSLSVYVTDGRQGWPESAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNSDGAISIRTETSVRYVPLTSKEAQLQG* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2353 229 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 4 229 IPR000682 GO:0004719|GO:0036211
Lja4g2353 229 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 195 IPR029063 -
Lja4g2353 229 CDD AdoMet_MTases 86 189 - -
Lja4g2353 229 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 12 224 - -
Lja4g2353 229 Gene3D Vaccinia Virus protein VP39 5 229 IPR029063 -
Lja4g2353 229 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 4 229 - -
Lja4g2353 229 TIGRFAM pimt: protein-L-isoaspartate O-methyltransferase 11 226 IPR000682 GO:0004719|GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2353 Lja-Chr4 26030906 26033384 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2353 K00573 - gmx:100527082 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2353 4 26030906 26033384 Lja4g2353 4 26030906 26033384 ECH
Lja4g2353 4 26030906 26033384 Lja1g5300 1 81813980 81817226 PCT