Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5300 ATGAGTGTTTACTACCACCACCACCCCCATTACTCTTCTTCCCCTTCCCCTTCCCCTTCGTTGGCCTATCGTTGTTGCCGCTACTGTTTCGCTTCTACACGCACTCTCTCAATCTCAAAGCACCGTCCTCTTTCTCTCTCTTCAATTACCAATTTCTACTTCTTTCAAAGCCCTAGTTTTCTCACGGGGAACGCTCTCTGCCTCACGATGCAGCGTTTCTGCTCTGTGAGTGGCATCAGCAAGAACAAAGCATTGGTGGAGAGGTTGCAGCGTTATGGAGTGATCACATCAAGTAAGGTGGGTGAAGTAATGGAAACTGTTGATAGAGCTTTGTTTGTACCTGATGGATCGGCACCCTATGATGATACCCCCATGGCCATAGGATACAATGCCACTATATCTGCACCACACATGCATGCCACCTGCCTTCAGTTGCTGGAGGAGAATTTGCGCCCTGGGATGCATGCTCTCGACATTGGCTCTGGAACAGGATATCTGACTGCGTGTTTTGCCTTGATGATTGGACCCCAAGGTCGTGCTGTTGGTGTGGAGCATATTCCTGAATTGGTTTCATTGTCCATAGACAATATTCAGAAAAGTGCTGCAGCTGCACAATTAAAAGATGGATCTCTTTCTGTTCATGTCGGTGATGGAAGAGAAGGTTGGCCAGAGTTTGCTCCTTATGATGCCATTCATGTTGGAGCAGCAGCACCAGAAATTCCCCAACCACTTATTGACCAGTTGAAGCCTGGTGGTAGAATGGTGATTCCTGTTGGAAACATGTTTCAAGATTTAAAGGTGGTGGATAAGAATTCTGATGGTTCTATCAGTATCCGGACTGAGACCTCCGTTCGTTATGTGCCCCTCACTAGTCGTGAAGCTCAGCTAAGAGGTTACTGA 900 0.4733 MSVYYHHHPHYSSSPSPSPSLAYRCCRYCFASTRTLSISKHRPLSLSSITNFYFFQSPSFLTGNALCLTMQRFCSVSGISKNKALVERLQRYGVITSSKVGEVMETVDRALFVPDGSAPYDDTPMAIGYNATISAPHMHATCLQLLEENLRPGMHALDIGSGTGYLTACFALMIGPQGRAVGVEHIPELVSLSIDNIQKSAAAAQLKDGSLSVHVGDGREGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNMFQDLKVVDKNSDGSISIRTETSVRYVPLTSREAQLRGY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5300 299 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 81 293 - -
Lja1g5300 299 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 20 299 - -
Lja1g5300 299 TIGRFAM pimt: protein-L-isoaspartate O-methyltransferase 80 295 IPR000682 GO:0004719|GO:0036211
Lja1g5300 299 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 82 267 IPR029063 -
Lja1g5300 299 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 20 299 IPR000682 GO:0004719|GO:0036211
Lja1g5300 299 Gene3D Vaccinia Virus protein VP39 76 299 IPR029063 -
Lja1g5300 299 CDD AdoMet_MTases 157 258 - -
Lja1g5300 299 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 216 231 IPR000682 GO:0004719|GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5300 Lja-Chr1 81813980 81817226 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5300 K00573 - gmx:100810913 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5300 1 81813980 81817226 Lja1g5300 1 81813980 81817226 ECH
Lja4g2353 4 26030906 26033384 Lja1g5300 1 81813980 81817226 PCT