Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2319 ATGGGCATGGAAGAGGAGGAGAAGAACAACAACAACATAGACGAAGGTGCTTCACTTCCATCAGGACCAGACGCAAAGAAGAGAAGAGTCACCTACTTCTACGAACCATCAATCGGTGATTACTACTACGGCCAAGGCCACCCGATGAAACCCCACCGTATGCGTATGGCCCACAATCTCATCGTCTATTACTCCCTCCACCGCCGCATGGAGATCAACCGCCCCTTCCCCGCCGGCCCTGATGACATCCGCCGCTTCCACTCCGACGACTACGTTGACTTCCTTGCCTCTGTCACCCCTGAGACCCTCTCTGAGCCAATCTTCGCCCGCCAGCTCAAGCGCTTCAATGTTGGTGATGACTGTCCTATCTTTGATGGTCTGTTTAATTACTGCCAGGCCTCCGCTGGTGGCTCCCTCGGCGCCGCCGTCAAGCTCAACCGCGGTGAAGCTGACATTGCTATTAATTGGGCTGGGGGCATGCACCATGCTAAGAAGTGTGAAGCTTCTGGCTTCTGTTACGTTAATGACATTGTTCTTGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGTGTGCTGTACATTGACATTGATGTTCACCATGGTGATGGTGTCGAGGAGGCCTTTTACACAACTGATAGAGTGATGACAGTATCTTTCCACAAGTTTGGGGACTTTTTCCCTGGCACTGGACACATTAAAGACATTGGAGTGGGCTCAGGAAAGCATTATGCTATCAATTGCCCATTAAATGATGGAATGGATGATGAAAGTTTTCGTGGTCTGTTTCGAACCATCATTCAAAAAGTCATGGAGGTTTACCAACCAGAAGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGATAGGTTGGGTTTCTTCAACTTGTCAGTGAAAGGGCATGCAGATTGTCTTCGTTTCGTTAGATCTTTCAATGTTCCTCTCATGGTCGTGGGTGGTGGAGGATATACAATTCGGAATGTCGCTCGCTGTTGGTGTTATGAGACAAGGACCAATTTGAGGATTAAGCCTAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTTCATGTCGATCCAAGCAACATGGAGAACCTAAACACACCCGAGGACATGGAAAGAATAAGGAACACGTTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACTACACCATCAACCACAGAAGCTCTAGAGGAGGCGGAAGAGGACATGGATAAAAGACCAAAACGACCCAAATGGAATGGTGAAGATTATGATTCAGATTACGATGAAGATGAAAAGCCTATTGCTAAGTGCTCAAACTTCACTGCCCATACGAGGGATGTCGCGAATGACATGGAAGAAGAGAAGCCAGAAGTGCATCCATCATCTTGA 1401 0.4761 MGMEEEEKNNNNIDEGASLPSGPDAKKRRVTYFYEPSIGDYYYGQGHPMKPHRMRMAHNLIVYYSLHRRMEINRPFPAGPDDIRRFHSDDYVDFLASVTPETLSEPIFARQLKRFNVGDDCPIFDGLFNYCQASAGGSLGAAVKLNRGEADIAINWAGGMHHAKKCEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKHYAINCPLNDGMDDESFRGLFRTIIQKVMEVYQPEAVVLQCGADSLSGDRLGFFNLSVKGHADCLRFVRSFNVPLMVVGGGGYTIRNVARCWCYETRTNLRIKPNEYYEYFGPDYTLHVDPSNMENLNTPEDMERIRNTLLEQISRLPHAPSAPFQTTPSTTEALEEAEEDMDKRPKRPKWNGEDYDSDYDEDEKPIAKCSNFTAHTRDVANDMEEEKPEVHPSS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2319 466 MobiDBLite consensus disorder prediction 450 466 - -
Lja4g2319 466 PRINTS Histone deacetylase superfamily signature 275 285 IPR000286 -
Lja4g2319 466 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Lja4g2319 466 PRINTS Histone deacetylase superfamily signature 158 181 IPR000286 -
Lja4g2319 466 SUPERFAMILY Arginase/deacetylase 28 387 IPR023696 -
Lja4g2319 466 Pfam Histone deacetylase domain 47 338 IPR023801 -
Lja4g2319 466 Gene3D Histone deacetylase domain 26 395 IPR037138 -
Lja4g2319 466 PIRSF HDAC_I_euk 4 464 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 PANTHER HISTONE DEACETYLASE 15 439 - -
Lja4g2319 466 PANTHER HISTONE DEACETYLASE 6 15 439 - -
Lja4g2319 466 PRINTS Histone deacetylase signature 136 156 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 PRINTS Histone deacetylase signature 177 193 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 PRINTS Histone deacetylase signature 82 100 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 PRINTS Histone deacetylase signature 115 132 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 PRINTS Histone deacetylase signature 49 66 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 PRINTS Histone deacetylase signature 236 249 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 PRINTS Histone deacetylase signature 253 271 IPR003084 GO:0004407|GO:0016575
Lja4g2319 466 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g2319 466 CDD HDAC_classI 33 337 - -
Lja4g2319 466 MobiDBLite consensus disorder prediction 391 466 - -
Lja4g2319 466 MobiDBLite consensus disorder prediction 409 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2319 Lja-Chr4 25646211 25665800 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2319 K06067 - gmx:100807923 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2319 4 25646211 25665800 Lja4g2319 4 25646211 25665800 ECH
Lja4g2319 4 25646211 25665800 Lja1g5699 1 100762728 100767389 PCT