Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5699 ATGGCGGAGAGTGACGGTGGCGCTTCGCTACCGTCGGTGGGTAGCGACGCCGTGAAGCGGAGTGTGACCTATTTCTACGAACCCCAAATCGGCGACTACTACTACGGCCAAGGCCACCCAATGAAACCGCACAGAATCCGCATGGCGCACGAGCTCATCATCAACTACTCCCTCTTCCGCCGCATGCAGATCAACCGTCCATACCCCGCCGCCGTCGAGGACATCTGCCGCTTTCACTCCGACGACTACGTCGACTTCCTCGCCTCCGTCTCGCCGGAAATCCTCTCCGAGCCCACCCACTCTCACTACCGCCAGCTCAAGCGCTACAACGTCGGTGAGGACTGTCCTGTTTTCGACGGACTCTTCGATTTCTGCCAGGCTTCCGCCGGTGGATCCATCGGCGCCGCCGTCACGCTCAACCACTCCCTCGCCGACATCGCGATCAACTGGGCCGGTGGCTTGCACCATGCGAAGAAGGCTGAGGCCTCTGGGTTTTGCTACGTCAATGACATCGTCCTGGGAATTCTCGAGCTTCTCAAGGTTCACAGGCGTGTGCTGTATGTTGATATTGATGTTCACCATGGAGATGGCGTTGAGGAGGCATTCTACACTACTGATAGAGTGATGACAGTGTCATTTCACAAGTTCGGGAATTTTTTCCCAGGAACTGGGCACATCAAGGACACTGGGCTGGGTCCTGGAAAAAACTATGCTATAAACGTCCCGCTAGATGATGGAATGGATGATGTGAATTTCCGTGATCTGTTCCGCCCCATCATTCGAAAAGTCATGGAGGTTTACCAACCTGATGCTGTTGTTCTTCAATGTGGAGCTGATTCATTGTCCGGCGACAGGTTGGGCTGCTTCAACTTGTCTGTGAAGGGTCATGCAGATTGCCTTCGCTTCCTTAGATCTTACAATGTCCCTCTAATGCTCTTGGGTGGGGGAGGATACACGGTCCGGAGCGTTGCTCGATGCTGGTGTTATGAGACTGCGGTGGCAGTAGGAGTGGAGCTGAGTAATAAGTTGCCATTCAATCAATATTATGAATTTTTTGGCCCTGAGTATACACTTCATGTCAGCCCTAGAAGCATGGCGAACCTAAACACACCCCAGGATTTGGAACTGATTAGGAATCTGTTGCTTGAGCAAATTTCCAGACTCCCCCATGCTCCCAGCATACCTTTTCAGACAACACCGTCAACCATAGAAGTTCCAGAAGAGGAAGAGGAGGACATGGATACAAGACCAAAACGTCGCATATGGAGCAGTGGAGAAGTTGATTCTGACTATGAAGATGAGGCACCTAGTCCACCGAACTCACATTCAACATCCAATATAAGCAGGCATCTGGCAGATGAGATGGAAGATGATGACTCGGATGCGACTCCATCACCTTAA 1401 0.5211 MAESDGGASLPSVGSDAVKRSVTYFYEPQIGDYYYGQGHPMKPHRIRMAHELIINYSLFRRMQINRPYPAAVEDICRFHSDDYVDFLASVSPEILSEPTHSHYRQLKRYNVGEDCPVFDGLFDFCQASAGGSIGAAVTLNHSLADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGNFFPGTGHIKDTGLGPGKNYAINVPLDDGMDDVNFRDLFRPIIRKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMLLGGGGYTVRSVARCWCYETAVAVGVELSNKLPFNQYYEFFGPEYTLHVSPRSMANLNTPQDLELIRNLLLEQISRLPHAPSIPFQTTPSTIEVPEEEEEDMDTRPKRRIWSSGEVDSDYEDEAPSPPNSHSTSNISRHLADEMEDDDSDATPSP* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5699 466 MobiDBLite consensus disorder prediction 412 427 - -
Lja1g5699 466 PIRSF HDAC_I_euk 7 464 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PRINTS Histone deacetylase signature 109 126 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PRINTS Histone deacetylase signature 130 150 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PRINTS Histone deacetylase signature 247 265 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PRINTS Histone deacetylase signature 171 187 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PRINTS Histone deacetylase signature 230 243 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Lja1g5699 466 PANTHER HISTONE DEACETYLASE 6 6 435 - -
Lja1g5699 466 SUPERFAMILY Arginase/deacetylase 21 386 IPR023696 -
Lja1g5699 466 Gene3D Histone deacetylase domain 12 400 IPR037138 -
Lja1g5699 466 Pfam Histone deacetylase domain 39 332 IPR023801 -
Lja1g5699 466 CDD HDAC_classI 25 334 - -
Lja1g5699 466 PANTHER HISTONE DEACETYLASE 6 435 - -
Lja1g5699 466 PRINTS Histone deacetylase superfamily signature 152 175 IPR000286 -
Lja1g5699 466 PRINTS Histone deacetylase superfamily signature 269 279 IPR000286 -
Lja1g5699 466 PRINTS Histone deacetylase superfamily signature 184 199 IPR000286 -
Lja1g5699 466 MobiDBLite consensus disorder prediction 391 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5699 Lja-Chr1 100762728 100767389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5699 K06067 - gmx:100801159 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5699 1 100762728 100767389 Lja1g5699 1 100762728 100767389 ECH
Lja4g2319 4 25646211 25665800 Lja1g5699 1 100762728 100767389 PCT