Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2314 ATGGTGAACGTTAAACTGAAAACCATGTTCTGCTTGAGGCACTTTCTGGTGCTGTCTTTGGCTTTGAATGTCAGTTTGATCCTCAAAATGCTGTGTGTGGGTGAACAAGATAACAACTGGTGTTGCTTGCAGAAAAGGGGGCATAATCACCTCATACACAAAGCGCGTTTGGCTGCTTCAGCAGTTGTCAACTCTACTCGTGCAGATCATGGCTCAGCCAGAGATAGAGTAATCAACCTTGACCATGGAGATCCAACAATGTATGAAGGGTTTTGGCGAAGAATGGGTGAGAAGACGACTTTAGTAATTCCGGGGTGGCAATCCATGAGCTATTTTTCTGATGGAGCAACAAGCATTTGCTGGTTCATGGAGAGGGAGTTTGAGAAGGAAGTGTTGAGGTTGCATAGAGTGGTGGGCAATGCAGTCACAGAAGGTCGTCACGTTGTTGTTGGGACCGGTTCTTCTCAGCTAATATTGGCTGCTCTTTATGCTCTGTCCTCGCCACATGCTGCTCAACCAATCAGTGTTGTATCTGCCGCACCCTTTTACTCGTCCTACCCATTAATGGTAGATTACCAGAAATCAGGTCTTCACAAATGGGATGGTGATGCAGAGAGTTTTGACAAAGATGGTCCTTACATTGAGCTGGTTACTTCTCCGAATAACCCTGATGGATATACAAGGCGATCGGTGGTTAACCGAAGCCAGGGAATATTGGTTCATGACCTTGCCTATTATTGGCCTCAGTACACTCCAATATCATCCCCTTCAGATCATGACCTTACTCTTTTCACTGTCTCAAAAAGTACTGGTCATGCAGGAATGCGCATAGGGTGGGCTCTTGTGAAAGACAGAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGCTAGCTACAATTGGTGTCTCCAAGGATTCTCAACTCAGGGCTGCCAAGGTTTTGAAAACAGTGTCTGACAGCTGCGAACAAGAAAATTTTCAAGATGGGGAATCATTTTTCGAGTACAGTTTTAAGATCATGGCACAAAGGTGGAAGCTGCTGAGAGAAGCAGTTGAGGGTGGTGGTTTGTTCAGTCTGCCCCAATTTTCACCTGCATTCTGCACCTTTTTTGACCAAGTGACAGAACCTCAACCAGGCTTTGCATGGATGAGGTGTGAGGGAGATATAGAAGACTGTGAAAGCTTCCTTCGAGGACATAAGATTTTGACAAGAAGTGGGAAACAATTTGGGGCTAGCCCAAAGTATGTAAGGATTAGCATGCTGGATACAGATGAAAATTTTAGCCACTTCATAGATAGGCTATATGCCATACAACAGTGA 1320 0.447 MVNVKLKTMFCLRHFLVLSLALNVSLILKMLCVGEQDNNWCCLQKRGHNHLIHKARLAASAVVNSTRADHGSARDRVINLDHGDPTMYEGFWRRMGEKTTLVIPGWQSMSYFSDGATSICWFMEREFEKEVLRLHRVVGNAVTEGRHVVVGTGSSQLILAALYALSSPHAAQPISVVSAAPFYSSYPLMVDYQKSGLHKWDGDAESFDKDGPYIELVTSPNNPDGYTRRSVVNRSQGILVHDLAYYWPQYTPISSPSDHDLTLFTVSKSTGHAGMRIGWALVKDREVAKKMTKFIELATIGVSKDSQLRAAKVLKTVSDSCEQENFQDGESFFEYSFKIMAQRWKLLREAVEGGGLFSLPQFSPAFCTFFDQVTEPQPGFAWMRCEGDIEDCESFLRGHKILTRSGKQFGASPKYVRISMLDTDENFSHFIDRLYAIQQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2314 439 Gene3D Aspartate Aminotransferase, domain 1 330 438 IPR015422 GO:0003824
Lja4g2314 439 CDD AAT_like 126 434 - -
Lja4g2314 439 Pfam Allinase 78 436 IPR006948 GO:0016846
Lja4g2314 439 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 439 - -
Lja4g2314 439 Gene3D - 123 327 IPR015421 GO:0003824
Lja4g2314 439 SUPERFAMILY PLP-dependent transferases 71 434 IPR015424 -
Lja4g2314 439 Gene3D - 59 118 IPR037029 GO:0016846
Lja4g2314 439 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 1 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2314 Lja-Chr4 25549841 25560222 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2314 K16903 - gmx:100777098 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2314 4 25549841 25560222 Lja4g2314 4 25549841 25560222 ECH
Lja4g2314 4 25549841 25560222 Lja1g5696 1 100645967 100658770 PCT