Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5696 ATGGCGAAGCTTCCTAATGTGTTCTCTTTGAGGCACTTGCTGGTGCTGTCCCTCGCTTTGAATGTGAGCTTCATACTGAGATTGTTATTTGAAGGTGAAGAAGGCCATGATCACTGTTCTTGTTTGAGAAAGGAAAGACGGGCCAAGATTGCTAGAGCTGATTCTAACACAGAGACAGGGGAGCAGAGTATCAAAGAATCACGTGTTGCTGTATCATCATCCACTTCATCTTTGGCTAATTCTACATGCAAAGATCATCCTGGAGGCAGGAATAGATTGGAAGAAGTTGGTGGGGTTATATGGTCAATTAGCACACTGCATGAAAGAGCACCCTTTCGGCCTCCTAATGGAATCTGGAATCTATTGACTGCATTGTGGGTCCTGCATAAATGGAAATCCACCTCCAACGTCTTTTGTCTTCTTCATTCACCCTTTAGCCCTGCACTGCATGATCCGACAATGTATGAGAGATTTTGGCGACAAACGGGTGAGAAGACCACGATCACAATTCATGGATGGCAATCAATGAGCTATTTCTCTGATGCTTCCAACATATGCTGGTTTCTGGAGGCAGAGTTTGCGAAGGAGGTGGTGAGGTTGCACAGAGTTGTTGGGAATGCAGTAACAGAAGGGCATCACGTTGTTGTTGGGACAGGTTCGTCTCAACTTTTTCTGGCGGCTCTCTATGCTCTGTCTCCGCCAGATGCGCTTCAACCCATCAGCGTTGTCTGCGCCTCACCATACTACTCGTCGTATCCATCAATGACGGATTACCTGAAATCAGGGCTATACAAATGGGGTGGTGATGCAGAAAGCTTTGACAGCAGAGATGGTCCCTACATTGAATTGGTTACTTCTCCCAACAATCCTGATGGACATGTCAGAAGATCCATGGTGAACCGAAGCCATGGCGTTCTGGTTCATGACCTTGCATATTACTGGCCCCAATACACTCCAATATCTTCGCCTGCAGATCATGATCTCATGCTTTTCACTGTCTCAAAGACCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTCTGGTCAAAGACAAAGAGGTAGCAAAGAAAATGACCAAATTCATAGAGCTCAACACAATAGGAGTCTCCAAGGATTCACAACTCAGGGCTGCTAAGGTTCTAAGGACAGTTTCTGACAGCTGTGAGCATGGAAACTCTCAAGAGGTTGAGTCATTCTTCAATTTTAGTCACAAGCTCATGTCAAACAGGTGGAAGCAATTGAGAATAGTAGTGAAGCACAGTGGATTGTTCAGTTTGCCCAAATTTTCCCCTGCATTCTGCTCCTTTTTCAATCAGGTGTCGGAGCCTCAACCAGCTTTTGTGTGGCTAAAGTGTGAGGGAAATGTGGAAGACTGCGAAGGCTTCCTTCGAGAACACAACATTTTAACGAGAAGTGGAAGACATTTTGGGGTTAGCCCAAAATATGTAAGAGTTAGCATGTTGGATACTGATGAAAATTTTGTGCACTTTCTAGATAGACTCTCTGCCATTAAATCTCAATAG 1524 0.4521 MAKLPNVFSLRHLLVLSLALNVSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHPGGRNRLEEVGGVIWSISTLHERAPFRPPNGIWNLLTALWVLHKWKSTSNVFCLLHSPFSPALHDPTMYERFWRQTGEKTTITIHGWQSMSYFSDASNICWFLEAEFAKEVVRLHRVVGNAVTEGHHVVVGTGSSQLFLAALYALSPPDALQPISVVCASPYYSSYPSMTDYLKSGLYKWGGDAESFDSRDGPYIELVTSPNNPDGHVRRSMVNRSHGVLVHDLAYYWPQYTPISSPADHDLMLFTVSKTTGHAGMRIGWALVKDKEVAKKMTKFIELNTIGVSKDSQLRAAKVLRTVSDSCEHGNSQEVESFFNFSHKLMSNRWKQLRIVVKHSGLFSLPKFSPAFCSFFNQVSEPQPAFVWLKCEGNVEDCEGFLREHNILTRSGRHFGVSPKYVRVSMLDTDENFVHFLDRLSAIKSQ* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5696 507 CDD AAT_like 192 501 - -
Lja1g5696 507 Gene3D Aspartate Aminotransferase, domain 1 396 505 IPR015422 GO:0003824
Lja1g5696 507 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 151 505 - -
Lja1g5696 507 Gene3D - 189 394 IPR015421 GO:0003824
Lja1g5696 507 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 3 93 - -
Lja1g5696 507 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 151 505 - -
Lja1g5696 507 Gene3D - 135 185 IPR037029 GO:0016846
Lja1g5696 507 Pfam Allinase 151 504 IPR006948 GO:0016846
Lja1g5696 507 SUPERFAMILY PLP-dependent transferases 147 503 IPR015424 -
Lja1g5696 507 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5696 Lja-Chr1 100645967 100658770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5696 K16903 - gmx:100807013 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5696 1 100645967 100658770 Lja1g5696 1 100645967 100658770 ECH
Lja4g2314 4 25549841 25560222 Lja1g5696 1 100645967 100658770 PCT