Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2313 ATGGCGCCAAGCTTAACCACCACCCTCAAAGAAACGGGACTCAACCATGCTAACAACTCACCTCTCTCCATAAAACTTGAAGCCTCAACGTTCCTTGCAAACAACCACCCTATCCTCACTCAAGTCCCACCAAACATAACCACCTGCACCACTCCCCACGATTCTCCCTCAAACAACACCATCACCGCCGGCTGCTTCGTCGGGTTCAATACCGACGAGCCGCGAAGCCGGCATGTGGTCTCCATGGGCAAGCTCAAGGGAATCAGGTTCAGCAGCATATTCCGTTTCAAGCTCTGGTGGAGCACCCACTGGTCCGGAACCAACGGCCGCGACGTGGAGCACGAAACCCAATTCATGATCTTGGAAAATGACACCGGCAAGGGCCGTCCCTACGTCCTCCTCTTGCCACTCATCGAAGGAGCTTTCAGAGCTTCTCTGCAACCAGGTTCCGATGATTACGTGGACATTTGCATGGAAAGTGGCTCCACGCGCGTCTCTGAATCAACCTTCAGAAGCGCCCTGTATATTCACCTTCACCATGACCCTTATGAGTTAATGAACGAAGCAATGAAAGTGATCAGAGTTCATCTTGGAACTTTCCGGCTTCTAGAAGAGAAAACTCCACCGGCTATTGTGGACAAGTTCGGGTGGTGCACCTGGGATGCCTTCTACCTCAAGGTACACCCTGATGGAGTGCGGCAAGGTGTGAAGGGCCTAGTGGAAGGTGGGTGCCCTCCGGGCTTTGTGATCATCGATGACGGTTGGCAAACCTTTTATCGCGATGACGAGCCGGTAACGGAGGAGCACGGCGGGCTAAGCTTAGAATGCTCGGTGCCGGGTGAGCAGATGTTGGGGAGGCTAGTGAGTTTTGAAGAGAATCGCAAGTTCAAGGGGTACGGCGGAGGAGGGATGGGTGGTTTTGTGAGGGAGCTGAAGGAGGAGTTTGGTGCGTTGGAGCATGTTTATGTGTGGCATGCGTTTTGTGGATACTGGGGTGGGATTAGGCCCGGCGTGAAAGGGATGCCGGAGGCGAAGGTGGTGGCGACGAAGCTCTCTCCAGGGGCGGAGATGATGATGACGGATTTGGCGGTGGTGAAGATTGTGGAGAATGGGGTCGGACTTGTGGCACCGGAAGAGGCACACATGTTGTACGAGGGACTTCACTCGCATTTGCAATCAGTGGGGATTGATGGGGTCAAGATTGACGTCACGCATGTTCTAGAGATGGTCTCAGAGGAATATGGTGGTCGTGTTGAACTTGCGAAAGCATACTACAAAGCACTCACTGATTCGGTGAGGAAGCATTTCAAAGGCCACGGTGTTATTTCCAGCATGCAACAGTGCAATGATTTCATGTTCCTTGGCACAGAAACAATATCATTTGGACGAGTTGGGGATGATTTTTGGTGCACTGACCCGGCCGGAGATCCAAACGGCACGTATTGGCTGCAAGGGTGTCACATGGTGCACTGCGCCTACAACAGCTTGTGGATGGGAAACTTTGTCCACCCGGATTGGGATATGTTCCAATCTGATCATGCATGCGCCGAATTCCATGCCGCTTCTCGTGCCATTTCTGGCGGACCGGTTTATGTAAGTGACTCTGTCGGGAGCCACAACTTCAAGTTGCTTAAGAAGCTGGTTCTGCCTGATGGCTCCATTTTGAGGTGCCAACATTATGCACTTCCCACCAGAGATTGCTTATTTGAAGACCCTTTACATGATGGCAAAACCATGCTTAAAATTTGGAACCTCAACAAATATAGTGGGGTTTTGGGTTTGTTCAATTGCCAAGGAGGAGGGTGGTGCCCTGAGACGCGGCGAAACAAGAGTGCCTCTGATTGCTCACATTCTGTGACATGCTTTGCAAGTCCTAAAGACATTGAATGGAGCAAAGGGAAAAACCCAATTTGCACCAAAGGGGTAGAAGTCTTTGCTGTGTACATGTTTAAGGATGACAAGTTGATTTTCCTCAAGTACACAGAGTGTGAGCAAGTTTCACTTGAGCCTTTTAGTTTTGAGCTATTGACCGTTTCTCCTGTGGTTGTGCTGCCCAAAAATTCAATCCAATTTGCTCCCATTGGATTGGTTAACATGCTCAATTCTGGGGGATCAATTCTGTCAGTGGAATTTGATAAACAGGACAACTTGGTGAGGATTGGGGTGAAGGGACATGGAGAAATGAAGGTATTTGCATCAGAGAAGCCAGTCAGTTGTAAGATTGATGGAGAGCTTGTTGAATTTGATTATGGTGATAGCATGGTGAAGCTCCAAGTCCCATGGCCTGGTTCTTCAAGGTTGTCTGTGGTTGAGTATTTATTCTAA 2325 0.4998 MAPSLTTTLKETGLNHANNSPLSIKLEASTFLANNHPILTQVPPNITTCTTPHDSPSNNTITAGCFVGFNTDEPRSRHVVSMGKLKGIRFSSIFRFKLWWSTHWSGTNGRDVEHETQFMILENDTGKGRPYVLLLPLIEGAFRASLQPGSDDYVDICMESGSTRVSESTFRSALYIHLHHDPYELMNEAMKVIRVHLGTFRLLEEKTPPAIVDKFGWCTWDAFYLKVHPDGVRQGVKGLVEGGCPPGFVIIDDGWQTFYRDDEPVTEEHGGLSLECSVPGEQMLGRLVSFEENRKFKGYGGGGMGGFVRELKEEFGALEHVYVWHAFCGYWGGIRPGVKGMPEAKVVATKLSPGAEMMMTDLAVVKIVENGVGLVAPEEAHMLYEGLHSHLQSVGIDGVKIDVTHVLEMVSEEYGGRVELAKAYYKALTDSVRKHFKGHGVISSMQQCNDFMFLGTETISFGRVGDDFWCTDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFVHPDWDMFQSDHACAEFHAASRAISGGPVYVSDSVGSHNFKLLKKLVLPDGSILRCQHYALPTRDCLFEDPLHDGKTMLKIWNLNKYSGVLGLFNCQGGGWCPETRRNKSASDCSHSVTCFASPKDIEWSKGKNPICTKGVEVFAVYMFKDDKLIFLKYTECEQVSLEPFSFELLTVSPVVVLPKNSIQFAPIGLVNMLNSGGSILSVEFDKQDNLVRIGVKGHGEMKVFASEKPVSCKIDGELVEFDYGDSMVKLQVPWPGSSRLSVVEYLF* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2313 774 Pfam Raffinose synthase or seed imbibition protein Sip1 27 758 IPR008811 -
Lja4g2313 774 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE-RELATED 1 774 - -
Lja4g2313 774 PANTHER - 1 774 IPR008811 -
Lja4g2313 774 Gene3D Aldolase class I 207 547 IPR013785 -
Lja4g2313 774 SUPERFAMILY (Trans)glycosidases 209 557 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2313 Lja-Chr4 25535790 25541724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2313 2 774 Glycoside Hydrolase AT5G40390 60.127 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2313 K06617 - gmx:100798883 1289.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5695 1 100633623 100637333 Lja4g2313 4 25535790 25541724 ECH
Lja4g2313 4 25535790 25541724 Lja4g2313 4 25535790 25541724 ECH