Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5695 ATGGCTCCAAGCTTGACAAAAAATGCGGCCCCAGACGTAATGACCCTCGTGGACCAAAACTCACCATCCACCATAACCTTAAAAGGCTCAAATTTCTTGGCCAACGGTCACCCTTTCCTCACCGAAGTCCCCTCCAACATAACCGCCACCCCATCACCCTTCCTCTACTCCAAATCCACAGAAGCAGCCAAGATGATGAACACGGTTGGCTGCTTCGTTGGGTTTGACGCCAACGAGCCAAAAGACCGCCATGTGATTCCCCTCGGAAAGCTGAGGGGAATCCGGTTCATGAGCATATTCCGGTTCAAGGTGTGGTGGACCACTCATTGGACCGGAACCAACGGCCATGAGATGGAGCACGAAACCCAAATGATGATCCTAGACAAAAATGAACTCATAGGACGCCCTTATGTTCTGCTGCTTCCGATCATCGAAGGTTCCTTCCGATCCTCGCTCCAACCCGGGTTCGACGACCACGTGGACATATGCGTTGAGAGCGGGTCGACATGTGTCAGAGAATCTAGCTTCAGGAGCTTTTCAGACTTGTACCTGTACATCCACGCTGGTGATGACCCGTTCCGTCTAGTGAAAGATGCAATAAAGGTCATCGTGGTTGATAAATTCGGTTGGTGCACGTGGGACGCCTTTTACTTAAAGGTGGACCCCACAGGGGTTCGTGAAGGTGTGAAAGCTCTCACCGACGGTGGCAACTCCTCCGGGATGAACCGAACCTCCGCGGGGGAGCAAATGCCGTGCCGGCTTATAAAGTTTCAGGAGAATCCCAAGTTCAGGGAGTATGGCGGCGGCGGGAAGGGTTTGGGGGCGTTTGTGAGGGATTTGAAGGAGGAGTTTAGGAGCGTGGAGCAGGTGTATGTTTGGCACGCACTGTGTGGGTATTGGGGTGGGGTGAGACCTCACGTGGAAGGCATGCCGGAGGCGAAGGTGGTTGCTCCGCGGTTGTCTCCGGGGTTGAAGATGACGATGGAGGATTTGGCGGTGGATAAGATTGTGAGTAGCGGTGTGGGGTTGGTGCCGCCGCAAATGGTCCAGAAATTGTACGATGGGCTCCACTCGCATTTGGAATCGGCGGGAATTGACGGTGTTAAGGTTGATGTCATACATTTGCTAGAGACGCTATCTGAGGAATACGGTGGCCGAGTCGACCTTGCAAAAGCTTATTACAAAGCACTCACTACTTCAGTGAAGAAGCATTTCAAAGGCAATGGAGTGATTGCCAGCATGGAGCATTGCAATGACTTCTTCCTTCTAGGCACAGAAGCCATAGCCCTTGGCCGCGTAGGTGATGATTTTTGGTGCACTGATCCCTCAGGAGATGTAAACGGAACCTATTGGCTCCAAGGGTGTCACATGGTGCATTGTGCCTACAACAGCTTGTGGATGGGAAATTTCATTCACCCGGACTGGGACATGTTCCAGTCCACTCACCCTTGCGCCGAGTTCCACGCTGCCTCTAGAGCCATCTCCGGCGGCCCCATTTACGTTTCTGATTGCGTTGGAAAGCACAACTTTAAGCTTCTCAAGACCCTCGCCTTGCCTGATGGCTCGATTTTGCGCTGTCAAGGCTACGCGCTCCCCACCCGAGACTGCTTGTTCCAAAACCCCTTGCATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAATACACAGGTGTTTTGGGTCTATTTAATTGCCAAGGTGGAGGGTGGTGTCCTGTGACTAGGAGAAACAAGAGTGCCTCTGAATTTTCACACACTGTGACATGCTCAGCGAGGCCTAAAGATATTGAATGGAGCAATGGGAAATGCCCAATTTGCATCGAAGGCGTGGATGTGTTTGCTGTGTATTTGTTCAAGGAAGGCAAGCTTAAGCTCATGAAGTCCTCTGATGAGTTGAAAGTTTCACTTGAGCCATTCAGTTTTGAGCTGCTCACAGTTTCGCCAGTGACATCCTTCTCGAAAAGGATGATTCAATTTGCTCCAATTGGGTTAGTGAACATGCTTAACTCTGGTGGTGCCATTCAGTCTATGGAGTTTGATGATCACGCGAGCCTGGCCAAAATTGGGGTGAGGGGTTGTGGGGAGATGAGGGTCTTCGCGTCTGAGAAGCCAGTTAGCTGCAAAATAGATGGTGTTGCTGTGACATTTGATTACGAAAATCGAATGGTAAGGGTCCAGGTTCCGTGGCCTAGTTCTTCAACTGTGTCAGTGGTTGAGTTTCTATTTTGA 2232 0.5076 MAPSLTKNAAPDVMTLVDQNSPSTITLKGSNFLANGHPFLTEVPSNITATPSPFLYSKSTEAAKMMNTVGCFVGFDANEPKDRHVIPLGKLRGIRFMSIFRFKVWWTTHWTGTNGHEMEHETQMMILDKNELIGRPYVLLLPIIEGSFRSSLQPGFDDHVDICVESGSTCVRESSFRSFSDLYLYIHAGDDPFRLVKDAIKVIVVDKFGWCTWDAFYLKVDPTGVREGVKALTDGGNSSGMNRTSAGEQMPCRLIKFQENPKFREYGGGGKGLGAFVRDLKEEFRSVEQVYVWHALCGYWGGVRPHVEGMPEAKVVAPRLSPGLKMTMEDLAVDKIVSSGVGLVPPQMVQKLYDGLHSHLESAGIDGVKVDVIHLLETLSEEYGGRVDLAKAYYKALTTSVKKHFKGNGVIASMEHCNDFFLLGTEAIALGRVGDDFWCTDPSGDVNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFKLLKTLALPDGSILRCQGYALPTRDCLFQNPLHDGKTMLKIWNLNKYTGVLGLFNCQGGGWCPVTRRNKSASEFSHTVTCSARPKDIEWSNGKCPICIEGVDVFAVYLFKEGKLKLMKSSDELKVSLEPFSFELLTVSPVTSFSKRMIQFAPIGLVNMLNSGGAIQSMEFDDHASLAKIGVRGCGEMRVFASEKPVSCKIDGVAVTFDYENRMVRVQVPWPSSSTVSVVEFLF* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5695 743 Pfam Raffinose synthase or seed imbibition protein Sip1 30 726 IPR008811 -
Lja1g5695 743 SUPERFAMILY (Trans)glycosidases 205 516 IPR017853 -
Lja1g5695 743 PANTHER - 1 743 IPR008811 -
Lja1g5695 743 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 5-RELATED 1 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5695 Lja-Chr1 100633623 100637333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5695 27 743 Glycoside Hydrolase AT5G40390 60.938 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5695 K06617 - gmx:100800308 1186.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5695 1 100633623 100637333 Lja4g2313 4 25535790 25541724 ECH
Lja1g5695 1 100633623 100637333 Lja1g5695 1 100633623 100637333 ECH