Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2311 ATGAAGGCAACACTAAGGTACTTAGCAGGCACTGCAGGCCCTAGTGGTTTTGGCTCGAATTCAACTGCAGAGCAAGTCACTGAAGATTGCTCTTCCTTGCTCCCTTCAAATTTAACAGCTCTGATCACAGGAGCTACTTCTGGTATTGGAGCTGAAACAGCAAGGGTCTTAGCCAAGAGAGGAGTTAGAGTTGTGATTGGTGCCAGGGACATGAAAAAGGCAAGGGAAGTGAGAGGAAAAATCCTAAAGGAGAGTCCAAACGCTGAGGTTATTCTATTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTTTAGCTTTAGAATTGCCCCTTAATATTCTCATAAACAATGCAGGAATATACTCTCAGAACTTGGAGTTCTCTGAAGAGAAAATTGAATTGACATTTGCTACAAATTACTTAGGACACTTTTTGTTAACAAAACTGCTACTGGAGAAAATCATAGATACTGCAAACAAGACAGGCATTCAAGGAAGAATCATAAATATTTCTTCTGTGATTCATAGCTGGGTGAAAAGAACCGGTTTTTGTTTCAACGACATGGTCCGCGGAAAAAATTATAATGGTACACGCGCATATGCTCAGTCAAAACTTGCCACAATTCTGCATGTGAAGGAAATAGCCAGACAGTTGAAGGCAAGGAATGCAAGAGTAACCATCAATGCAGTGCATCCAGGCATTGTGAAGACAGGAATTATTAGAGCACATAAAGGTTTAATAACAGATTCCTTGTTTTTCATTGCATCAAAGTTGCTGAAATCGATATCACAGGGCGCATCAACTACTTGTTATGTTGCTCTAAGCAGCCAAACAGAGGGGGTGAGTGGGAAGTACTTTACAGATTGTAACGAGAGTGAATGCTCGAGTCTAGCGAACGATGAATTGGAAGCTAAAAAGCTATGGAATGACACACATGCCTTGCTTCAGAAGAGACTAAGACAAGCAGCAACTAGAAGAAGCCCTTTTCTAGCCTTGTAG 1017 0.41 MKATLRYLAGTAGPSGFGSNSTAEQVTEDCSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDMKKAREVRGKILKESPNAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGIYSQNLEFSEEKIELTFATNYLGHFLLTKLLLEKIIDTANKTGIQGRIINISSVIHSWVKRTGFCFNDMVRGKNYNGTRAYAQSKLATILHVKEIARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSSQTEGVSGKYFTDCNESECSSLANDELEAKKLWNDTHALLQKRLRQAATRRSPFLAL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2311 338 Gene3D - 31 326 - -
Lja4g2311 338 Pfam short chain dehydrogenase 39 180 IPR002347 -
Lja4g2311 338 PANTHER RETINOL DEHYDROGENASE 4 328 - -
Lja4g2311 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lja4g2311 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lja4g2311 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lja4g2311 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Lja4g2311 338 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lja4g2311 338 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lja4g2311 338 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lja4g2311 338 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lja4g2311 338 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lja4g2311 338 CDD retinol-DH_like_SDR_c_like 39 314 - -
Lja4g2311 338 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2311 Lja-Chr4 25517551 25521042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2311 17 294 Acyl Lipid Metabolism Gene Families AT3G46170 26.552 1.00e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2311 - - gmx:100776567 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2311 4 25517551 25521042 Lja4g2311 4 25517551 25521042 ECH
Lja4g2311 4 25517551 25521042 Lja1g5691 1 100521519 100525060 PCT