Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5691 ATGAAGGCAACACTGAGATACCTAGCTGGAGTTGCAGGCCCTAGTGGTTTTGGCTCCAATTCAACTGCTGAGCAAGTTACTCAAAATTGCTCTTGCTCCCTTCCTTCCCATCTAACTGCTCTCATCACTGGGGCCAGTTCTGGTGTTGGAGCTGAAACAGCAAGGGTATTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGTGAGGGACTTGAGGAAGGGAAAGGAAGTGAGAGACAATATATTGAAGGAGAGTCCAAATGCTGAGGTTATTCTGTTGAAGATTGATCTTAGTTCTTTTGCTTCTGTACACAGATTTTGTTCCCAGTTTTTAGCTTTAGATCTTCCTCTCAATATTCTCATAAACAATGCAGGGATATTCTCTCAAAACTTGGAGTTCTCTGAAGACAAAATTGAGATGACATTTGCTACAAATTACTTAGGTCATTTTTTGTTAACAGAAACCTTACTAGACAAAATGATAGAAACGGCAGAGAAGACAGGAGTTGAAGGAAGAATAATAAATGTTTCTTCTGTCATTCATAGCTGGGTGAAGAGAGATGGTTTTCATTTCAACGATATACTCAATGGAAAAAGTTATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCCAATATTTTGCATGCCAAGGAAATAGCCAGACAACTCAAGGAAAGGAATGCAAGAGTAACTATAAATGCAGTACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAGGGCTTATTAACGGATTCTCTATTTTTCATCGCATCAAAGTTACTCAAATCAAAATCACAGGGTGCATCAACAACGTGTTATGTGGCTCTAAGCCCAAAACTAGAAGGTATAAGTGGGAAATACTTTACAGATTGCAATGAGAGTAAGTGCTCAAGCCTAGCAAATGATGAATTGGAAGCTCAAAAACTATGGAACAATACCTATGCTTTACTTCAAAAACGACTACGCCAAGCAACACTTTGA 993 0.3938 MKATLRYLAGVAGPSGFGSNSTAEQVTQNCSCSLPSHLTALITGASSGVGAETARVLAKRGVRVVIGVRDLRKGKEVRDNILKESPNAEVILLKIDLSSFASVHRFCSQFLALDLPLNILINNAGIFSQNLEFSEDKIEMTFATNYLGHFLLTETLLDKMIETAEKTGVEGRIINVSSVIHSWVKRDGFHFNDILNGKSYNGTRAYAQSKLANILHAKEIARQLKERNARVTINAVHPGIVKTGIIRAHKGLLTDSLFFIASKLLKSKSQGASTTCYVALSPKLEGISGKYFTDCNESKCSSLANDELEAQKLWNNTYALLQKRLRQATL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5691 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lja1g5691 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lja1g5691 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lja1g5691 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lja1g5691 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lja1g5691 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lja1g5691 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lja1g5691 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lja1g5691 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 325 - -
Lja1g5691 330 Gene3D - 34 326 - -
Lja1g5691 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 299 IPR036291 -
Lja1g5691 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Lja1g5691 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Lja1g5691 330 PANTHER RETINOL DEHYDROGENASE 4 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5691 Lja-Chr1 100521519 100525060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5691 19 248 Acyl Lipid Metabolism Gene Families AT1G63380 27.848 1.91e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5691 - - gmx:100801384 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5691 1 100521519 100525060 Lja1g5691 1 100521519 100525060 ECH
Lja4g2311 4 25517551 25521042 Lja1g5691 1 100521519 100525060 PCT