Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2291 ATGCATTCGCCATCGTTAAGTATGCGTAGTCTGGTCAATTTGCGGTTGCTTAGTTCTGATGTGAGCGTGAAGAGGAGAAGTAATGTCATCGTGGCTTGTGCCACAGAGGGAGACACTCGAAGCTCCTTTCTCTCCCGGACCCAAACCTATGCTCTTCTCAAGCAGCAAATGGAAGTTGCTGCCAAATCTGAGGATTACAAGGAAGCAGCTAGAATTCGAGATTCTCTGAAGTCGTTTGAAGATGAGGAGCCTGTTTTGCGTCTCAAGAGATTGCTCAAGGAAGCAATTGCTGATGAGAGGTTCCAGGATGCAGCTAGTTATCGTGATGAGCTAAAGAAAATTTGCCCCCACTCTCTTTTAAAATGTTCCAGTGACGCTACAACACTGGGAGTCAGGGTTCAGGTAAGAAGTGTATATATAGAGGGTAGAAGTCAGCCTTCAAAGGGACTATACTTCTTTGCATATAGAATAAGAATTTCCAATAACTCAGACCACCCTGTCCAACTTCTTAAAAGGCATTGGATTATAACCGACGCCAATGGGAAAGCAGAAAATGTCTGGGGGATTGGGGTTGTTGGTGAACAGCCAGTAATACATCCCAGGACTAGTTTTGAATACTCTTCAGCATGCCCATTAAGCACACAAAATGGTAGAATGGAAGGTGACTTTGAGATGATCCACATTGAGAGTGTAGGCTCACGATCATTTAATGTTGTCATTGCCCCATTTTCTCTCTCTTTACTTGGAGATGATGAAGTTCATACGATTTGA 771 0.4371 MHSPSLSMRSLVNLRLLSSDVSVKRRSNVIVACATEGDTRSSFLSRTQTYALLKQQMEVAAKSEDYKEAARIRDSLKSFEDEEPVLRLKRLLKEAIADERFQDAASYRDELKKICPHSLLKCSSDATTLGVRVQVRSVYIEGRSQPSKGLYFFAYRIRISNNSDHPVQLLKRHWIITDANGKAENVWGIGVVGEQPVIHPRTSFEYSSACPLSTQNGRMEGDFEMIHIESVGSRSFNVVIAPFSLSLLGDDEVHTI* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2291 256 ProSiteProfiles ApaG domain profile. 125 252 IPR007474 -
Lja4g2291 256 PANTHER OS05G0170800 PROTEIN 32 253 - -
Lja4g2291 256 SUPERFAMILY ApaG-like 127 246 IPR036767 -
Lja4g2291 256 ProSiteProfiles UVR domain profile. 47 82 IPR001943 GO:0005515
Lja4g2291 256 Pfam ApaG domain 143 226 IPR007474 -
Lja4g2291 256 Pfam UvrB/uvrC motif 53 81 IPR001943 GO:0005515
Lja4g2291 256 Pfam UvrB/uvrC motif 87 114 IPR001943 GO:0005515
Lja4g2291 256 Gene3D ApaG domain 121 254 IPR036767 -
Lja4g2291 256 ProSiteProfiles UVR domain profile. 82 117 IPR001943 GO:0005515
Lja4g2291 256 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 48 80 IPR036876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2291 Lja-Chr4 25290531 25293890 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2291 - K06195 lja:Lj4g3v1476200.1 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2291 4 25290531 25293890 Lja4g2291 4 25290531 25293890 ECH
Lja4g2291 4 25290531 25293890 Lja1g5671 1 100161340 100163701 PCT