Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5671 ATGCAGTCTTTAACCACCAAGATGTGCACGGGTTTACGGTTACCGGTTTTCCCGGAACCGGAGGCGTGGCCAAGGAGGCAATCGGTGAATTGTAGTAACCGTAAGAGGAGGAATAGGAGTGTGTTCATGGCATGCAGTGCAGAGAGGAATGAGAATGATAAAGGAGAGAGTGGGAGTTCAAGATCAAACTTGTTTTTATCTCGGAGGAGCCATAATTACGCCATGTTGAAGAGACGAATGGACGTAGCTGCTAAATCTGAGAATTACGAAGAGGCTGCGAGGATTCGTGACTCGCTGAAATGTTTTGAAGATGAAGTACCAGTTCTGCGTTTGAGGAGGTTGTTGAAAGAAGCAATTTGCAATGAGAGATTCCAAGATGCAGCTAAATATCGCGACGAGCTAAAAGAAATTGCCCCACATTCTCTCTTGAAATGTTCAAGTGATGCTACGACCTTGGGTATCAGGGTTCAAGTTAGGAGTGTATTTATAGAGGGAAGAAGTCAGCCTTCAGAGGAGCTATACTACTTTGCATATACAGTCAAAATTACCAACAACTCAAACCGCCCTGTTCAACTTCTTAGAAGACATTGGATTGTAGCTGATGCTAATGGAAAAACTGAAAATATCTGGGGAATTGGGGTTGTTGGTCTACAACCAGCTATATTTCCTAAGAGCAGTTTTGAATACTCTTCTGCATGCCCATTAAGCACACAAAATGGTAGACTGGAGGGTGACTTTGAAATGATACATATTGATCGAGGAGGCTCAAGAGTATTTAATGTGGCTATTGCTCCTTTCTCCCTCTCTTTACTTGGAGATGATGATGGTCAAACTATTTGA 840 0.4286 MQSLTTKMCTGLRLPVFPEPEAWPRRQSVNCSNRKRRNRSVFMACSAERNENDKGESGSSRSNLFLSRRSHNYAMLKRRMDVAAKSENYEEAARIRDSLKCFEDEVPVLRLRRLLKEAICNERFQDAAKYRDELKEIAPHSLLKCSSDATTLGIRVQVRSVFIEGRSQPSEELYYFAYTVKITNNSNRPVQLLRRHWIVADANGKTENIWGIGVVGLQPAIFPKSSFEYSSACPLSTQNGRLEGDFEMIHIDRGGSRVFNVAIAPFSLSLLGDDDGQTI* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5671 279 ProSiteProfiles UVR domain profile. 105 140 IPR001943 GO:0005515
Lja1g5671 279 ProSiteProfiles UVR domain profile. 70 105 IPR001943 GO:0005515
Lja1g5671 279 ProSiteProfiles ApaG domain profile. 148 275 IPR007474 -
Lja1g5671 279 Pfam UvrB/uvrC motif 110 137 IPR001943 GO:0005515
Lja1g5671 279 Pfam UvrB/uvrC motif 76 100 IPR001943 GO:0005515
Lja1g5671 279 Pfam ApaG domain 166 249 IPR007474 -
Lja1g5671 279 PANTHER OS05G0170800 PROTEIN 27 275 - -
Lja1g5671 279 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 68 103 IPR036876 -
Lja1g5671 279 Gene3D ApaG domain 144 274 IPR036767 -
Lja1g5671 279 SUPERFAMILY ApaG-like 150 269 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5671 Lja-Chr1 100161340 100163701 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5671 - K06195 gmx:100799029 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5671 1 100161340 100163701 Lja1g5671 1 100161340 100163701 ECH
Lja4g2291 4 25290531 25293890 Lja1g5671 1 100161340 100163701 PCT