Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2285 ATGTTGAGAGTCAGCGCAAAGAGGGTTTTCGGAACGGCGTCGCAGGCCATTAGGGTTCCGGCGCGGTTCTACCACGAGAGGGTGGTCGATCACTACGAGAACCCCCGCAACGTCGGCTCCTTCGACAAGAATGACCCCACCGTCGGCACCGGTTTGGTCGGAGCACCGGCCTGCGGCGACGTCATGAAACTCCAAATCAAGATCGACGATTCCACCGGAAAGATCACCGACGCTTGCTTCAAGACGTTCGGCTGCGGCTCCGCCATCGCTTCTTCCTCCGTCGCTACTGAATGGGTGAAAGGAAAACACATGGAGGAAGTTTTGACCATTAAGAACACTGAAATTGCCAAGCATCTTTCTCTTCCACCAGTTAAGCTCCATTGCAGCATGCTTGCTGAAGATGCCATTAAAGCAGCTGTGAAGGACTATGAAGCTAAACGTGCCATGGCAGGAGCGGCAACAACTGAACAGAAGGCTGCCACTGCTTGA 489 0.5419 MLRVSAKRVFGTASQAIRVPARFYHERVVDHYENPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKIDDSTGKITDACFKTFGCGSAIASSSVATEWVKGKHMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAMAGAATTEQKAATA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2285 162 TIGRFAM iscU: FeS cluster assembly scaffold IscU 24 147 IPR011339 GO:0005506|GO:0016226|GO:0051536
Lja4g2285 162 Gene3D - 23 162 - -
Lja4g2285 162 CDD IscU_like 24 139 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lja4g2285 162 Pfam NifU-like N terminal domain 24 148 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lja4g2285 162 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 16 160 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lja4g2285 162 SUPERFAMILY SufE/NifU 23 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2285 Lja-Chr4 25239440 25241556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2285 K22068 - gmx:100526856 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2285 4 25239440 25241556 Lja1g5667 1 99982078 99985039 PCT