Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5667 ATGCTGAGAGTGAGAATTGCAGCATGCGCGAAGAGAATCATCGGAACGGCGTCGTCGCTGGAGGCGCCACATCCGGCGATTAGGGTTCTGCCGCGGCTCTACCACGAGAGGGTGGTGGACCACTACGAAAACCCCCGGAATGTTGGTTCCTTCGACAAGAACGACCCGAACGTTGGCACGGGTCTGGTCGGAGCACCCGCTTGTGGCGACGTCATGAAACTCCAGATTAGGGTTGATGAGACTGGAAAAGTTATCGATGCTTGCTACAAAACCTTCGGTTGTGTATCCGCCATTGCTTCTTCCTCCGTCGCTACTGAATGGGTAATTGGAAAGGAAATGGAGGAAGTTTTGACCATTAAAAACACTGAGATTGCAAAGCATCTATCACTCCCACCGGTCAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATGAAAGCAGCTGTTAAAGATTTAGTATCTAAGCGTGGGCCAGCCTCTGGGGAGAAAGCTGCCACAGCATGA 504 0.5198 MLRVRIAACAKRIIGTASSLEAPHPAIRVLPRLYHERVVDHYENPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIRVDETGKVIDACYKTFGCVSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAMKAAVKDLVSKRGPASGEKAATA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5667 167 CDD IscU_like 33 148 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lja1g5667 167 Gene3D - 33 166 - -
Lja1g5667 167 PANTHER IRON-SULFUR CLUSTER ASSEMBLY PROTEIN 3 11 164 - -
Lja1g5667 167 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 11 164 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lja1g5667 167 Pfam NifU-like N terminal domain 34 156 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lja1g5667 167 SUPERFAMILY SufE/NifU 33 157 - -
Lja1g5667 167 TIGRFAM iscU: FeS cluster assembly scaffold IscU 34 156 IPR011339 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5667 Lja-Chr1 99982078 99985039 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5667 K22068 - gmx:100806169 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2285 4 25239440 25241556 Lja1g5667 1 99982078 99985039 PCT