Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2276 ATGGCGCACACAGGAACAGGCACAGCCAACACTCCAATTCACAGGTCGAGTTCACGGCCACAACTGGATCTTAGCAAAGCAGCGATTCAAGGAAATGTGGAAGACAGGGATCCCACTATTTTGTTACCTAACCAATCTCATGATATATCTCATTTGGCTCTTGACATTGGAGGGTCTTTGATAAAGTTGGTGTACTTTTCAAGACATGAAGACCATTCAACTAATGATAAAAGGATGAGAAGGTTGAGAAGTTTGAAGGATAAACTGGGATTTCCCAATGGTAACAGGAGAAGCTATCCTATTCTTGGTGGGAGGCTTCATTTTGTCAAGTTTGAGACTAACAAGATCAATGAATGCTTAGATTTTATCTATTCAAAGAATCTTCACCATGGTAGGGAATCATCGAATACCATAATTAAGGCTACTGGTGGTGGAGCATTCAAATATGCTGAACTTTTTAAAGAGAAACTCGGGCTTAGCCTTGACAAAGAAGATGAAATGGCTTGTCTTGTAGCCGGAGCCAATTTCTTGCTCAAGGCAATTCGCCATGAAGCTTTTACACACATGGAGGGTCAGAAAGAGTTTGTTCAAATTGATTCTAATGAGTTGTATCCTTATCTTCTAGTTAATATTGGATCAGGTGTTAGTATGATCAAGGTTGATGGGGATGGCAAATTTGAGAGGGTTAGTGGAACAAATGTAGGTGGTGGTACTTACTGGGGCTTGGGAAGGCTGTTAACAAAGTGCAAGAGCTTTGATGAGTTACTCGAGCTGAGTCAGAAAGGAGACAACAGAAACACAGATATGCTAGTTGGAGACATTTATGGGGGTATGGACTATTCTAAGATTGGCCTATCGGCTTCTACAATTGCGTCAAGTTTTGGCAAGGCTACACTGGAAGGAAAGGAGCTTGAAGATTACAGACCTGAAGATATATCACTCGCTCTGCTACGGATGATTTCATACAACATTGGCCAGATATCTTACTTGACTGCACTGCAATTTGGATTGAAGCGTATCTTTTTTGGAGGTTTTTTCACAAGGGGTCATGCCTATACCATGGATGCTATTTCTTTTGCAATACATTTCTGGTCTAAAGGGGCTACACAAGCAATGTTCTTGCGACATGAAGGATTTCTGGGAGCATTAGGTGCATTTATGAGCTATGAAAAGCATGGTTTAGATGACCTCATGGTGCATCAGTTAGTTGAAAGATTCCCAATGGGAGCTCCATATACAGGAGGCAAGATTCAGGGCCCACCACATAGGAATTTGAATGAGAAGATTTCATGGATGGAGAAGTTTCTGCAGAAGGGGACTGAGATTACTGCCCCTGTGCCAATGGCTCCTCCTGGAACTACTGGGCTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAGTGCTCTACGACACGATGCTAGTGCTCTAAATGTTGGTGTTCTCCATCTAGTACCAACCTTAGAGGTCTTTCCTTTATTAGCAGACCCAAAAATATATGAGCCTAATACTATTGATCTCTCAGATCACAGCGAATTAGAATATTGGTTCAAGATTTTGTCTGATCACTTGCCAGATCTTGTGGACAAGGCTGTCGCAAGTGAAGGTGGGACTGATGATGCCAAAAGAAGGGGCGATGCTTTTGCTCGTGCATTTTCTGCTCACCTGGTTAGGTTAATGGAGGAGCCTGCTGCATACGGGAAGTTAGGCTTGGCCAACCTATTGGAAATGAGGGAAGAGTGCTTGAGAGAATTCCATTTTGTCGATGCCTACATAAGCATAAAGCAGAGGGAAAATGAAGCTTCACTTGCTGTTTTACCTGATTTGTTGATGGAGCTTGATAGTTTGGATGAGGAAACTAGACTACTTACTTTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGACTGGGGATCTCGTGCATGTGTGGATCTCTATCATGAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAATAAAATGCAGAGACCTTGGCGAGTGGACAATTTTGATGCCTTTAAAGAGAGAATGTTGGGGACTGGGGACAAGAAACTTCCCCCACACAGAAGAGCTTTACTTTTTGTGGATAATGCAGGTGCTGACATTGTTCTAGGGATGCTTCCCTTGGCACGAGAGCTCCTCCGCCGTGGAACTGAAGTGGTTCTGGTAGCAAATTCCCTTCCTGCTTTAAATGATGTGACTGCAATGGAGCTTCCTGATATTGTTGCTGAGGCTGCCAAGCACTGTGACATTCTTAGGCGAGCGGCTGAATCGGGAGGCTTGCTTGTGGATGCAATGACCTATACCTTAGATAGTCCCAGACAAAATTTGCCTTCGGTTCCCTTGATGGTTGTTGAGAATGGGTGTGGTAGTCCTTGTATAGACTTAAGGCAGGTCAGCTCTGAGCTGGCTGCTGCTGCAAAAGGTGCAGATCTGATAATTTTGGAAGGGATGGGTAGATCTCTTCATACAAACCTCAATGCTCGATTTCAGTGTGATGCTTTAAAGCTTGCAATGGTGAAAAACCAGAGATTGGCTGAAAAGTTAGTTAAAGGGAATATATACGACTGTGTTTGCAAATACGAGCCTGCAAATTGA 2598 0.4296 MAHTGTGTANTPIHRSSSRPQLDLSKAAIQGNVEDRDPTILLPNQSHDISHLALDIGGSLIKLVYFSRHEDHSTNDKRMRRLRSLKDKLGFPNGNRRSYPILGGRLHFVKFETNKINECLDFIYSKNLHHGRESSNTIIKATGGGAFKYAELFKEKLGLSLDKEDEMACLVAGANFLLKAIRHEAFTHMEGQKEFVQIDSNELYPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQKGDNRNTDMLVGDIYGGMDYSKIGLSASTIASSFGKATLEGKELEDYRPEDISLALLRMISYNIGQISYLTALQFGLKRIFFGGFFTRGHAYTMDAISFAIHFWSKGATQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIQGPPHRNLNEKISWMEKFLQKGTEITAPVPMAPPGTTGLGGFEVPLSKGSALRHDASALNVGVLHLVPTLEVFPLLADPKIYEPNTIDLSDHSELEYWFKILSDHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLVRLMEEPAAYGKLGLANLLEMREECLREFHFVDAYISIKQRENEASLAVLPDLLMELDSLDEETRLLTLIEGVLAANIFDWGSRACVDLYHEGTIIEIYRMSRNKMQRPWRVDNFDAFKERMLGTGDKKLPPHRRALLFVDNAGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAESGGLLVDAMTYTLDSPRQNLPSVPLMVVENGCGSPCIDLRQVSSELAAAAKGADLIILEGMGRSLHTNLNARFQCDALKLAMVKNQRLAEKLVKGNIYDCVCKYEPAN* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2276 865 Pfam Fumble 51 387 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lja4g2276 865 Gene3D - 268 378 - -
Lja4g2276 865 SUPERFAMILY Actin-like ATPase domain 49 184 IPR043129 -
Lja4g2276 865 Pfam Damage-control phosphatase ARMT1-like domain 573 851 IPR002791 -
Lja4g2276 865 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 666 863 - -
Lja4g2276 865 PANTHER PANTOTHENATE KINASE 1 787 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lja4g2276 865 TIGRFAM panK_eukar: pantothenate kinase 51 388 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lja4g2276 865 PANTHER PANTOTHENATE KINASE 2 1 787 - -
Lja4g2276 865 SUPERFAMILY AF1104-like 481 863 IPR036075 -
Lja4g2276 865 SUPERFAMILY Actin-like ATPase domain 156 389 IPR043129 -
Lja4g2276 865 Gene3D - 44 197 - -
Lja4g2276 865 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g2276 865 PIRSF PanK_long 1 865 IPR015844 GO:0004594|GO:0015937
Lja4g2276 865 Gene3D - 502 587 IPR035073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2276 Lja-Chr4 25069757 25080096 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2276 K24265 K09680 gmx:100783082 1544.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5664 1 99904040 99925442 Lja4g2276 4 25069757 25080096 ECH
Lja4g2276 4 25069757 25080096 Lja4g2276 4 25069757 25080096 ECH
Lja4g2276 4 25069757 25080096 Lja1g5664 1 99904040 99925442 PCT