Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2267 ATGTCCACTCAATCGCCACCGCTTCCTCCTCCCACCACCGCCACCGACGAAAACCAAGGTGCTGAAATTGTGCAACCAACAAATTTGGGTCAGCAAAATGCTACAGAAGAGCCTGTTAAACAGAGTTCAACTACCTCAGTCTTTGTGAACACAGAGCCATTGCGGGAAGATCAAATTCAGAATGCTGTGAAATTTCTATCGCACCCAAAAGTTAAAGGTTCACCTGTTATCTACAGGCGGTCATTTCTGGAGAAGAAAGGCCTTACGAAAGAAGAGATTGATGAAGCCTTTCGGCGTGTGCCAGATGATGCTCCAACTGTGCAGACATCTGGTGTAAATCAAGATGGACAATTGAAACCATCGTCGAACACTCATCAGTCAGCCCAAATACAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTCAATAGTTCATCAGGAACCTTATCACGCTCTAGATTTCACTGGTCCCATGCCCTCATTGCTGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTTTAATAGTTAAGAATTCGATTCTTCCTCGGTTAAAATCTTGGATAAGAAAGGTTGCCCTAGATGATGATGATGATGATGAACAGTTAAAGAAAACTAACAAAAAACCAACTTTGGCGGAAGAAGCTGCACAAGCTGCAAAATCAGCTGCTGCTGCAGCTGCAGATGTAGCAAGAGCAAGCCAAGAAATGCTGGCTTCAAAAAGTGAAGAGAGGAAACACTTTGTCGAAGTTGTGAGCCTTTTAGACAAGCAAATACAAGAAATGAAGTTAATGACGAAAGCAATAAGTAGATTGGAAGGGCAAGAAGATCTCCGAGTCAGTCAAACAAGTTCGAAGCAACTGATTGGGAATGGCAAGGCGGACTATGACTTGCGTTCAGGGAGATCTTTATCCCCACCTGCATCTGTTGAAACATCGAGTGCTCTTCATCCGAAGTCATATGCTGAGATAATGGCCATGGTCCAAAGAGGAGAGAAGCCTGCTAATATTAGAGATATCAATGATTTACCTCCCAACCCTAGTCAAGAACCATCAAATCCTCTCTTAATGCCTAGATCCAAGCCTTGGGAGGTTGGTCAGGTGCAAAACACATCTACCCAAGTGCTTCAGCCTCAACAAAATGGTGAAGACTTGAATAATATCAAGGTCCAAGAAGCCACTCAATCAAATGGGGTTGACCCTGTTCCCTGGTGGCAGAAGAAAAATGTTAGAATCAGAGAGATTGAAGAAAATGAGTATAATGTAGCACCTTTTGGTGCTGCATCCACTCAACAGCCACCACAACGTGTGTGGGTTCCTCCTCAACCTCCACCCATAGCTATGGCGGAGGCTGCAGAAGCAATCAGACGCCCGAAGTCGGCGGTCCAAAAGGAACAGGCGTCAGATAATCAGTCCGCAGCTGATTCTTCAGAAAACTCTGATGAGGTGCGTGCGGTCACAAAACTACCGGAATCTGAAGGTGCTGTAGAGGGCAACAACACCAGCTCACTTATTGGCTCAGGGGAGATACAAGAAGACAATCAAGTTACACAAGAAGAGAAATGA 1569 0.4525 MSTQSPPLPPPTTATDENQGAEIVQPTNLGQQNATEEPVKQSSTTSVFVNTEPLREDQIQNAVKFLSHPKVKGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDDAPTVQTSGVNQDGQLKPSSNTHQSAQIQTLQPGLPASTGVNSSSGTLSRSRFHWSHALIAVGLLAASGAGTALIVKNSILPRLKSWIRKVALDDDDDDEQLKKTNKKPTLAEEAAQAAKSAAAAAADVARASQEMLASKSEERKHFVEVVSLLDKQIQEMKLMTKAISRLEGQEDLRVSQTSSKQLIGNGKADYDLRSGRSLSPPASVETSSALHPKSYAEIMAMVQRGEKPANIRDINDLPPNPSQEPSNPLLMPRSKPWEVGQVQNTSTQVLQPQQNGEDLNNIKVQEATQSNGVDPVPWWQKKNVRIREIEENEYNVAPFGAASTQQPPQRVWVPPQPPPIAMAEAAEAIRRPKSAVQKEQASDNQSAADSSENSDEVRAVTKLPESEGAVEGNNTSSLIGSGEIQEDNQVTQEEK* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2267 522 MobiDBLite consensus disorder prediction 495 514 - -
Lja4g2267 522 MobiDBLite consensus disorder prediction 292 315 - -
Lja4g2267 522 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 16 504 - -
Lja4g2267 522 Gene3D - 47 109 IPR036388 -
Lja4g2267 522 MobiDBLite consensus disorder prediction 454 522 - -
Lja4g2267 522 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 16 504 IPR025655 GO:0005515|GO:0005778|GO:0016560
Lja4g2267 522 MobiDBLite consensus disorder prediction 426 445 - -
Lja4g2267 522 MobiDBLite consensus disorder prediction 465 481 - -
Lja4g2267 522 Coils Coil 256 276 - -
Lja4g2267 522 MobiDBLite consensus disorder prediction 106 149 - -
Lja4g2267 522 Pfam Family of unknown function (DUF5572) 318 366 - -
Lja4g2267 522 MobiDBLite consensus disorder prediction 100 149 - -
Lja4g2267 522 MobiDBLite consensus disorder prediction 1 53 - -
Lja4g2267 522 MobiDBLite consensus disorder prediction 14 53 - -
Lja4g2267 522 Pfam Pex14 N-terminal domain 55 99 IPR006785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2267 Lja-Chr4 24926518 24935353 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2267 K13343 - gmx:100784152 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2267 4 24926518 24935353 Lja4g2267 4 24926518 24935353 ECH
Lja4g2267 4 24926518 24935353 Lja1g5657 1 99511652 99516088 PCT