Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2266 ATGCCAGGAATTGTTGCAGTTGTAGTTCATGATGAAGGGAGAGTAAATGAAATAAATGAGATTGATAACACTTTACCCTCTAAGGAAACCTTAACTCCAATCAAGCCCCCAAGGACTCCACAAAGACATCAACGTGCCGCCTCCGTTGATCGGCTTTATGACATGCAAAGTTCTGATCAATCACCCTCGACACGAAGTTTCGGTTCGGATATTGAAGAGTCTAGTGTTGATTCAGAATTCCGCCGTCTAGTTGGGGGAAAGAAGAGGGGAGGGGGCTATAGCAGCGAAGCATCTTCTAGAATGGGTAGTCCTTGGAATGATAAGAAGTTGGAAAAGGTGAATGGGTTTCAGTCTCCAACTAACAAGTCATCAAAATCAACACCAAAGGGAAAGTGTCCTCCTGCAAAACCTCCTGTCGAAAAGAAGAATGTTAATCCTGTGAGAAAACAAAACACTGGAGTTGCTCGTGTGACAAAGCCTAAACATTCTTCTACCCGAAGATCACTTTCGCTTGGTCGAGTTGAGATTTCCACTGATTCAACAGTAGACAAGCCTGAGCTGGGACCAGTTTTACTGAAGCAAGCAAGGGACATGATTTCATCAGGAGAAAATCCAGAGAAAGCTCTTGAGTTAGCTCTTCAAGCAACAAAATTGTTTGAGAAGGCTGCTAAGGGGAAACCGAGTTTGGAGCTGGTAATGTGTTTACATGTAACAGCAGCAATATATTGCAGCTTGGGGCTTTACATCGAGGCAATTCCAATTATCGAGCGCTCAATTGAGATTCCTGTGATTGAGGAAGGCGAACAACACGCCACTGCTAAATTTGCCGGATACATGCAATTGGGAGACACATATGCTATGTTAGGCCAGATTGAGAATTCAATTATGTGCTACACCTCAGGGCTGAAAGTTCAGATGCAAGTGTTGGGAGAAGCAGACCCGAGAGTCGGCGAAACATGCCGGTACGTGGCTGAAGCTAATTTTCAAGCACTGCAATTTGATGAGGCAGATAGGCTGTGCCAGATGGCTCTTGATATTCACAGATCAAATGGTTCACCCTCATCTCTTGAAGAAGCTGCTGACAGGAGGCTGATGGGACTTATATGTGAAATAAATGGGCATCATGAAGCGGCGCTGGAGCATCTTGTTCTAGCAAGCATGGCAATGGTGGCAAATGGACAGGAAGTGGAAGTGGCATCTGTTGACTGCAGCATTGGCGACACGTACTTATCCTTGGCTAGATATGATGAGGCCATCTTCGCATATCAGAAAGCGCTAACAGTTTTCAAGACTCACAAAGGAGAGAATCATCCTGCTGTGGGATTAGTCTTTGTTCGTCTGGCCGACTTGTATAACAGGACATGGAGAATAAAGGAATCAAAATCATATTGTGAGAATGCTCTTAGGATATATGAGAATCCCATGTCTGGGGTGCCTCCGCAGGAGATTGCAAGTGGTTTTATGAATGTTTCAGCTATCTATGAATCAATGAATGAGCTTGATCAGGCACTTAACTTGCTGCACAAGGCATTAGAGATATACAATGATGCCCCTGGTCAGCAAAGCACAATAGCAGGAATTGAAGCTCAGATTGGGGTCATGTACTTCATGTTAGGGAACTATACTCAATCGTATAATTCTTTCAAGAATGCTGTCTCGAAGCTTCGCGCTACCGGAGAGAAGAAATCAACCTACTTTGGTATTGTTCTTAATCAGATGGGACTTACTTGTGTGCAGCTCAATGCATTAAATGAGGCTGCAGAATTATTTGAAGAAGCAAAGATTATTTTAGAACTAGAATATGGATCCTATCACCCTGAAACCCTTGGGGTATGTAGCAACCTTGCTGGCACGTTTGATGCAATTGGCAGGTTGGATGAGGCAATTGATATTCTGGAGTACATTGTCACCGTGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGAAGTTGTTGATGAGAAGAGAAGGTTGGATGAATTGTTGAAGGAAACAGGTAGAGTTCGGAGCAGAAAAACCAAGTCATTGGAGAACCTTCTTGATGCCAGTACTCGTACTACTAACAACCTTGGCATCAAGGCATGA 2082 0.4395 MPGIVAVVVHDEGRVNEINEIDNTLPSKETLTPIKPPRTPQRHQRAASVDRLYDMQSSDQSPSTRSFGSDIEESSVDSEFRRLVGGKKRGGGYSSEASSRMGSPWNDKKLEKVNGFQSPTNKSSKSTPKGKCPPAKPPVEKKNVNPVRKQNTGVARVTKPKHSSTRRSLSLGRVEISTDSTVDKPELGPVLLKQARDMISSGENPEKALELALQATKLFEKAAKGKPSLELVMCLHVTAAIYCSLGLYIEAIPIIERSIEIPVIEEGEQHATAKFAGYMQLGDTYAMLGQIENSIMCYTSGLKVQMQVLGEADPRVGETCRYVAEANFQALQFDEADRLCQMALDIHRSNGSPSSLEEAADRRLMGLICEINGHHEAALEHLVLASMAMVANGQEVEVASVDCSIGDTYLSLARYDEAIFAYQKALTVFKTHKGENHPAVGLVFVRLADLYNRTWRIKESKSYCENALRIYENPMSGVPPQEIASGFMNVSAIYESMNELDQALNLLHKALEIYNDAPGQQSTIAGIEAQIGVMYFMLGNYTQSYNSFKNAVSKLRATGEKKSTYFGIVLNQMGLTCVQLNALNEAAELFEEAKIILELEYGSYHPETLGVCSNLAGTFDAIGRLDEAIDILEYIVTVREEKLGTANPEVVDEKRRLDELLKETGRVRSRKTKSLENLLDASTRTTNNLGIKA* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2266 693 Coils Coil 580 600 - -
Lja4g2266 693 MobiDBLite consensus disorder prediction 51 71 - -
Lja4g2266 693 SMART tpr_5 567 600 IPR019734 GO:0005515
Lja4g2266 693 SMART tpr_5 609 642 IPR019734 GO:0005515
Lja4g2266 693 SMART tpr_5 525 558 IPR019734 GO:0005515
Lja4g2266 693 SMART tpr_5 317 350 IPR019734 GO:0005515
Lja4g2266 693 SMART tpr_5 441 474 IPR019734 GO:0005515
Lja4g2266 693 SMART tpr_5 399 432 IPR019734 GO:0005515
Lja4g2266 693 SMART tpr_5 275 308 IPR019734 GO:0005515
Lja4g2266 693 SMART tpr_5 484 517 IPR019734 GO:0005515
Lja4g2266 693 PANTHER KINESIN LIGHT CHAIN 15 682 - -
Lja4g2266 693 SUPERFAMILY TPR-like 213 645 IPR011990 GO:0005515
Lja4g2266 693 MobiDBLite consensus disorder prediction 19 168 - -
Lja4g2266 693 Pfam MalT-like TPR region 364 515 IPR041617 -
Lja4g2266 693 Gene3D Tetratricopeptide repeat domain 387 559 IPR011990 GO:0005515
Lja4g2266 693 Gene3D Tetratricopeptide repeat domain 191 386 IPR011990 GO:0005515
Lja4g2266 693 Gene3D Tetratricopeptide repeat domain 560 691 IPR011990 GO:0005515
Lja4g2266 693 MobiDBLite consensus disorder prediction 113 128 - -
Lja4g2266 693 MobiDBLite consensus disorder prediction 72 86 - -
Lja4g2266 693 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 15 682 - -
Lja4g2266 693 Pfam Tetratricopeptide repeat 608 649 - -
Lja4g2266 693 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Lja4g2266 693 MobiDBLite consensus disorder prediction 145 168 - -
Lja4g2266 693 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2266 Lja-Chr4 24921874 24924432 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2266 - - gmx:100813461 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5655 1 99412628 99416707 Lja4g2266 4 24921874 24924432 ECH
Lja4g2266 4 24921874 24924432 Lja4g2266 4 24921874 24924432 ECH
Lja4g2266 4 24921874 24924432 Lja1g5655 1 99412628 99416707 PCT