Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5655 ATGCCGGGGATTGTTACAAATGGGGTTTGTGATGGGGCAGTGAATGAGATGAATGGTAACCATTCACCCTCAAAGGAAACCTTAGCTCCAGTCAAGTCCCCTAGGGGTTCCCTGAGTCCACAGAGAGGCCAGAATGGAGGACCTAATTTCCCAGTTGATGGGGTGATTGAGCCGTCGATTGAGCAGCTCTATGAAAATGTGTGTGACATGCAGAGTTCTGATCAGTCACCCTCAAGGAAAAGTTTTGGATCTGATGGTGATGAGTCTAGGATTGATTCGGAGTTGCGCCAGCTAGTTGGAGGACGGATGAGGGAGGTGGAGATAATGGAAGAGGAAGTGGAAGTCGAGGTGGAAAAAGAGCGGGGAGGGAGTTCTAGTGGTGAAATTTCTTCTGGAGTGGGTGGTTTATCATCCAATGAAAAGAAGTTGGATAAGGTGCATGAGATTCAATCTGCAACTACTAGTTCTGTTTCCACAGAAAAATCTGTCAAAGCATTGAACTCACAGTTGGATGCTTCACCTAAATCAAAACCCAAAGGAAAAAGTCCTCCTGCAAAAGCTCCTTTGGAAAGAAAGAATGATAAGCCTCTATTGAGAAAACAAACTAAAGGAGTTGCTAGCGGTGTGAAGAGTTTGAAGAGTTCTCCTTTGGGAAAGTCAGTGTCGCTGAATCGAGTTGAGAATTCAGCCGAATCAGCCTTAGATAAACCAGAGAGGGCACCAATATTGCTAAAGCAAGCAAGAGATCTGATTTCATCAGGAGATAATCCACAGAAAGCTCTTGAATTAGCTCTTCAGGCAATGAATCTTTTGGAGAAGCTTGGTAATGGAAAACCAAGTTTGGAGCTGGTTATGTGTTTACATGTTACTGCAGCAATCTATTGCAATTTGGGTCAATACAACGAGGCAATTCCAATTCTCGAGCGCTCGATTGAGATTCCTGTTATTGGGGAAAGTCAGCAGCATGCCCTTGCAAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTATGTGCTACAGTTCTGGTTTTGAAGTCCAGAGGCAGGTTTTGGGAGAAACAGACCCAAGAGTCGGCGAAACTTGTCGATACGTGGCTGAGGCTAATGTTCAAGCTTTGCAATTCGATGAAGCAGAGAGGCTCTGTCAGATGGCTCTTGACATTCATAAAGCAAATAGTTCAGCCCCTTCACTTGAAGAGGCTGCTGATAGGAGGCTCATGGGCCTCATATTGGATACAAAGGGAAATCACGAAGCGGCTCTCGAGCATCTTGTTTTAGCCAGCATGGCAATGGTAGCAAATGGCCAAGAAGTGGAAGTGGCTTCTGTTGACTGCAGCATTGGAGACACATACTTATCCATGTCCCGATATGATGAGGCCGTCTTCGCGTATGAGAAAGCGCTAACAGTTTTCAAGACTGGAAAAGGAGAGAATCATCCTGCTGTCGGATCAGTCTTCGTACGTTTGGCTGACTTGCATAACAGGACAGGGAAGATAAAGGAGTCGAAATCATATTGCGATAGTGCACTTCGAATATACGAGAATCCAATGCCTGGAGTTAATCCAGAGGAGATTGCTAGTGGTCTTACGAATGTTTCGGCCATCTATGAATCAATGAATGAGCTTGAAAAGGCACTCAAGTTACTTCAGAAAGCACTGCTGATATATAATGACAGCCCTGGACAGCAAAGCTCAATAGCAGGGATTGAAGCTCAGATGGGGGTCATGTACTACATGCTGGGGAACTATACTGAATCTTACAACACATTGAAGAATGCTATTACGAAGCTTCGTGCGATCGGAGAGAAGAAATCGTCATTCATTGGAATTGCTCTTAATCAAATGGGACTTGCCTGTGTACAGCTTTATGCCTTTGGTGAGGCTACGGAATTGTTTGAAGAAGCAAAGAGTATTTTGGAACATGAGTATGGACCTTATCACCCTGAAACGCTTGGGGTTTATAGTAATCTTGCTGGCACATATGATGCAATTGGCAGGCTGGATGAGGCAATTCAAATTCTGGAGTATGTTGTTAGTGTGAGGGAGGAAAAGCTTGGAACAGCAAATCCTGATGTTGATGATGAGAAGAGAAGGTTGAGTGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCAGAAAAGTCATGTCACTTGAGAACCTTCTTGATGCCAATGCTCGCATTCCAAACATCAACCTTGTCATCAAGGCCTGA 2241 0.4467 MPGIVTNGVCDGAVNEMNGNHSPSKETLAPVKSPRGSLSPQRGQNGGPNFPVDGVIEPSIEQLYENVCDMQSSDQSPSRKSFGSDGDESRIDSELRQLVGGRMREVEIMEEEVEVEVEKERGGSSSGEISSGVGGLSSNEKKLDKVHEIQSATTSSVSTEKSVKALNSQLDASPKSKPKGKSPPAKAPLERKNDKPLLRKQTKGVASGVKSLKSSPLGKSVSLNRVENSAESALDKPERAPILLKQARDLISSGDNPQKALELALQAMNLLEKLGNGKPSLELVMCLHVTAAIYCNLGQYNEAIPILERSIEIPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYSSGFEVQRQVLGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANSSAPSLEEAADRRLMGLILDTKGNHEAALEHLVLASMAMVANGQEVEVASVDCSIGDTYLSMSRYDEAVFAYEKALTVFKTGKGENHPAVGSVFVRLADLHNRTGKIKESKSYCDSALRIYENPMPGVNPEEIASGLTNVSAIYESMNELEKALKLLQKALLIYNDSPGQQSSIAGIEAQMGVMYYMLGNYTESYNTLKNAITKLRAIGEKKSSFIGIALNQMGLACVQLYAFGEATELFEEAKSILEHEYGPYHPETLGVYSNLAGTYDAIGRLDEAIQILEYVVSVREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKVMSLENLLDANARIPNINLVIKA* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5655 746 ProSiteProfiles TPR repeat profile. 451 484 IPR019734 GO:0005515
Lja1g5655 746 MobiDBLite consensus disorder prediction 1 217 - -
Lja1g5655 746 Gene3D Tetratricopeptide repeat domain 325 436 IPR011990 GO:0005515
Lja1g5655 746 ProSiteProfiles TPR repeat profile. 536 569 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 284 317 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 327 360 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 661 694 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 577 610 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 536 569 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 451 484 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 369 402 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 619 652 IPR019734 GO:0005515
Lja1g5655 746 SMART tpr_5 493 526 IPR019734 GO:0005515
Lja1g5655 746 MobiDBLite consensus disorder prediction 184 199 - -
Lja1g5655 746 MobiDBLite consensus disorder prediction 81 123 - -
Lja1g5655 746 MobiDBLite consensus disorder prediction 65 80 - -
Lja1g5655 746 Gene3D Tetratricopeptide repeat domain 222 324 IPR011990 GO:0005515
Lja1g5655 746 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 734 - -
Lja1g5655 746 SUPERFAMILY TPR-like 256 697 IPR011990 GO:0005515
Lja1g5655 746 Pfam Tetratricopeptide repeat 285 313 - -
Lja1g5655 746 Coils Coil 542 569 - -
Lja1g5655 746 Coils Coil 702 722 - -
Lja1g5655 746 Pfam Tetratricopeptide repeat 619 689 - -
Lja1g5655 746 Pfam Tetratricopeptide repeat 450 525 - -
Lja1g5655 746 Gene3D Tetratricopeptide repeat domain 613 723 IPR011990 GO:0005515
Lja1g5655 746 Gene3D Tetratricopeptide repeat domain 437 612 IPR011990 GO:0005515
Lja1g5655 746 MobiDBLite consensus disorder prediction 149 175 - -
Lja1g5655 746 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5655 Lja-Chr1 99412628 99416707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5655 - - mtr:MTR_3g077950 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5655 1 99412628 99416707 Lja4g2266 4 24921874 24924432 ECH
Lja1g5655 1 99412628 99416707 Lja1g5655 1 99412628 99416707 ECH
Lja4g2266 4 24921874 24924432 Lja1g5655 1 99412628 99416707 PCT