Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2224 ATGGAACACAACACTAGTCACAGATTCAATGACCACAACTCAAGGTCTCTGTCTTCACAACGCAGCCTCGCATCAATCCCTTCCCTTAACTCCTCATTCTCCAATCTCCTCAACCCTTCCCAAACCTCCTCCTACAACTGCCTCACAACTCTCAAAGGCCAATCATCATCATCCTACACATCTTCCCTCACCCTCACCGGCAAGTTCCTCTACACCGGTTCCTCCGACAGAGAAATCAGATCCTTCAACCGTGCCCAACTCGACCCTCAACAACATTCACTCGTTCTTGCAGGAAAGGGTGCTGTAAAATCAATAGTATTTCACTCCGACAAGCTCTTCACTGCTCACCAGGACCACAAAATCCGCGTCTGGAAAATCACCGACAACAACAACGAACAGAAACAGAGCAAACAACAAAAGCAAACACTTTTAGCCACGCTTCCAACGTTCAACGACCGTGTCTCGAAGATGCTGATACCCAAGAACCACGTTCAGGTACGGAGGCACAAAAAATGCACCTGGGTTCACCATGTTGACACCGTGTCTGCTATGGCTATATCCAAGGACGGGACCTTGCTGTACTCTGTTTCATGGGACAGAACAATCAAGATTTGGCGAACCAGAGACTTCACCTGCTTGGAATCAGTTTCTAATGCCCACGATGATGCTGTAAACGCGGTTGCAGTTTCAGATGATGGGCACGTTTACACTGGATCAGCTGATAAGAGGATCAAGGTGTGGAAGAAAAAGGAAGGAGAAAAGAAACACAGTTTGTTGGACACCTTGGAGAAACACAACTCTGGGATCAATGCTCTGGCTCTAAGCAGTGATGGCTCTGTGTTGTATTCTGGTGCATGTGACAGGTCGATATTGGTGTCGGAAAAGGGTGAAAATGGTGAGTTGGTCGTGGTGGGTGCGCTTAGGGGGCACACGAGGTCTATACTGTGTTTGGCTGTGGTTGAGAATTTGATTTGCAGCGGTTCTGAGGATAAAACGATAAGGATTTGGAGAGGTGAAGGGAATGAGTATTGTTGTTTAGGTGTTTTGGAAGGGCATAGGGGTCCGGTTAAGAGCCTAAGTGCAGTGGTTGATCGTTGTGACTCGTCGGAAGCTTCTTATCTTGTTTATAGTGGCAGTTTGGACTGTGATATTAAGGTTTGGCAGATTTTTGTTCCTGTTCTATAA 1185 0.4692 MEHNTSHRFNDHNSRSLSSQRSLASIPSLNSSFSNLLNPSQTSSYNCLTTLKGQSSSSYTSSLTLTGKFLYTGSSDREIRSFNRAQLDPQQHSLVLAGKGAVKSIVFHSDKLFTAHQDHKIRVWKITDNNNEQKQSKQQKQTLLATLPTFNDRVSKMLIPKNHVQVRRHKKCTWVHHVDTVSAMAISKDGTLLYSVSWDRTIKIWRTRDFTCLESVSNAHDDAVNAVAVSDDGHVYTGSADKRIKVWKKKEGEKKHSLLDTLEKHNSGINALALSSDGSVLYSGACDRSILVSEKGENGELVVVGALRGHTRSILCLAVVENLICSGSEDKTIRIWRGEGNEYCCLGVLEGHRGPVKSLSAVVDRCDSSEASYLVYSGSLDCDIKVWQIFVPVL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2224 394 SUPERFAMILY WD40 repeat-like 43 389 IPR036322 GO:0005515
Lja4g2224 394 Pfam WD domain, G-beta repeat 344 387 IPR001680 GO:0005515
Lja4g2224 394 Pfam WD domain, G-beta repeat 175 205 IPR001680 GO:0005515
Lja4g2224 394 Pfam WD domain, G-beta repeat 258 291 IPR001680 GO:0005515
Lja4g2224 394 Pfam WD domain, G-beta repeat 212 248 IPR001680 GO:0005515
Lja4g2224 394 Pfam WD domain, G-beta repeat 305 336 IPR001680 GO:0005515
Lja4g2224 394 Gene3D - 161 391 IPR015943 GO:0005515
Lja4g2224 394 SMART WD40_4 255 294 IPR001680 GO:0005515
Lja4g2224 394 SMART WD40_4 44 83 IPR001680 GO:0005515
Lja4g2224 394 SMART WD40_4 300 337 IPR001680 GO:0005515
Lja4g2224 394 SMART WD40_4 167 206 IPR001680 GO:0005515
Lja4g2224 394 SMART WD40_4 342 388 IPR001680 GO:0005515
Lja4g2224 394 SMART WD40_4 209 248 IPR001680 GO:0005515
Lja4g2224 394 SMART WD40_4 89 125 IPR001680 GO:0005515
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 205 - -
Lja4g2224 394 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 7 394 - -
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 336 IPR001680 GO:0005515
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 134 IPR001680 GO:0005515
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 248 - -
Lja4g2224 394 CDD WD40 67 388 - -
Lja4g2224 394 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 394 IPR045182 -
Lja4g2224 394 Gene3D - 35 156 IPR015943 GO:0005515
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 292 IPR001680 GO:0005515
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 257 IPR001680 GO:0005515
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 336 - -
Lja4g2224 394 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g2224 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Lja4g2224 394 PRINTS G protein beta WD-40 repeat signature 193 207 IPR020472 -
Lja4g2224 394 PRINTS G protein beta WD-40 repeat signature 324 338 IPR020472 -
Lja4g2224 394 PRINTS G protein beta WD-40 repeat signature 235 249 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2224 Lja-Chr4 24447806 24449252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2224 167 389 Miscellaneous Gene Families AT5G08390 23.348 1.28e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2224 - - gmx:100801906 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5628 1 98714020 98715651 Lja4g2224 4 24447806 24449252 ECH
Lja4g2224 4 24447806 24449252 Lja4g2224 4 24447806 24449252 ECH
Lja4g2224 4 24447806 24449252 Lja1g5628 1 98714020 98715651 PCT