Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5628 ATGGACTACCATCAAACTTACAGTGCCTCTTCTTCCTCATCTCACTCTAACCACCTTCAACCACGCGTGAATTCACAACGCAGCCTCGCCTCAGTTCCTTCCCTTAACAACAACCACCACCACTCTTCCTCCGCCGTCTACCACCACTGCCTCACCACCCTCAAAGTCCAAGACTCATCCTACCCTTCCTCTCTGACTCTCTCCGGAAAATTTCTCTATACCGGTTCCTCCGACCGAGAAATCAGTTCCTGGAACCGCAGCTTTGAAGATTCAGATTCAAATTCAACCACCAACAAGGTGGTTGCCGGAAAAGGAGCCGTAAAATCCTTAGTGATCCAATCCGACACCCTTTTCAGTGCCCACCAGGACCACAAAATCCGTGTCTGGAAAATCAGCAACAGCCACCAAAAGCACACCCATTTAGCCACTCTCCCCACGCTTGGCGACCGCGCCGCCAAGGTTCTCCACCCCAAGAATCAAGTCCAGATTAGGCGACACAAGAAATGCACGTGGGTCCACCACGTGGACACTGTGTCCGCCCTGACCCTGTCCCAAGACGGAGCCTTGTTGTACTCCGTCTCGTGGGACAGGGCCATCAAAATCTGGCGGACTAGGGACTTCACCTGCCTGGAGTCCCTCACCAACGCGCACGACGACGCCATCAATGCAGTCGCGGTCTCCACCGACGGCCGCGTCTACAGCGGATCAGCCGATAAAACAATCAAAGTGTGGGGGAAACTCCAGGGGGAGAAGAAACATTCATTGTTGGACACCATGGAGAGACACAACTCCGGGGTCAATGCGTTAGCCCTGAGTGGCGATGAGTCGCTGTTGTATTCCGGCGCGTGTGACAGGTCGGTGCTGGTGTGGGAGAAGGAGGGGGAGGATGGTGGGAGAATGGTGGTGGTGGGTGCGTTGAGGGGGCACACTAATTCAATTTTGTGCTTGGCTGTTGTGGCGGTTTTGGATTTGGTTTGTAGCGGCTCTGCTGATAAAACAATTCGGATTTGGAAAGGTATTGGTCACAGGGAATATTCGTGTTTGGCTGTTTTAGAAGGACATGCGGGTTCAATCAAGTGTTTAAGTGCTGTGGTTGATTTTGATGATGCGGCGGATTCTGAAGCGTCTTTTCTTGTTTATAGTGGCAGTTTGGACTGTGACGTTAAAGTTTGGCAGATTTTTGTTCCTGCTAGCTAA 1197 0.5205 MDYHQTYSASSSSSHSNHLQPRVNSQRSLASVPSLNNNHHHSSSAVYHHCLTTLKVQDSSYPSSLTLSGKFLYTGSSDREISSWNRSFEDSDSNSTTNKVVAGKGAVKSLVIQSDTLFSAHQDHKIRVWKISNSHQKHTHLATLPTLGDRAAKVLHPKNQVQIRRHKKCTWVHHVDTVSALTLSQDGALLYSVSWDRAIKIWRTRDFTCLESLTNAHDDAINAVAVSTDGRVYSGSADKTIKVWGKLQGEKKHSLLDTMERHNSGVNALALSGDESLLYSGACDRSVLVWEKEGEDGGRMVVVGALRGHTNSILCLAVVAVLDLVCSGSADKTIRIWKGIGHREYSCLAVLEGHAGSIKCLSAVVDFDDAADSEASFLVYSGSLDCDVKVWQIFVPAS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 202 - -
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 244 - -
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 338 IPR001680 GO:0005515
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Lja1g5628 398 Pfam WD domain, G-beta repeat 304 338 IPR001680 GO:0005515
Lja1g5628 398 Pfam WD domain, G-beta repeat 257 290 IPR001680 GO:0005515
Lja1g5628 398 Pfam WD domain, G-beta repeat 208 244 IPR001680 GO:0005515
Lja1g5628 398 Pfam WD domain, G-beta repeat 346 391 IPR001680 GO:0005515
Lja1g5628 398 Pfam WD domain, G-beta repeat 172 202 IPR001680 GO:0005515
Lja1g5628 398 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Lja1g5628 398 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Lja1g5628 398 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Lja1g5628 398 MobiDBLite consensus disorder prediction 1 37 - -
Lja1g5628 398 SUPERFAMILY WD40 repeat-like 65 393 IPR036322 GO:0005515
Lja1g5628 398 SMART WD40_4 93 130 IPR001680 GO:0005515
Lja1g5628 398 SMART WD40_4 344 392 IPR001680 GO:0005515
Lja1g5628 398 SMART WD40_4 299 338 IPR001680 GO:0005515
Lja1g5628 398 SMART WD40_4 47 85 IPR001680 GO:0005515
Lja1g5628 398 SMART WD40_4 252 291 IPR001680 GO:0005515
Lja1g5628 398 SMART WD40_4 206 245 IPR001680 GO:0005515
Lja1g5628 398 SMART WD40_4 164 203 IPR001680 GO:0005515
Lja1g5628 398 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 396 IPR045182 -
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
Lja1g5628 398 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 7 396 - -
Lja1g5628 398 CDD WD40 68 392 - -
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 338 - -
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
Lja1g5628 398 Gene3D - 44 143 IPR015943 GO:0005515
Lja1g5628 398 Gene3D - 144 395 IPR015943 GO:0005515
Lja1g5628 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 244 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5628 Lja-Chr1 98714020 98715651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5628 168 393 Acyl Lipid Metabolism Gene Families AT3G18860 25.316 2.52e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5628 - - gmx:100815608 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5628 1 98714020 98715651 Lja4g2224 4 24447806 24449252 ECH
Lja1g5628 1 98714020 98715651 Lja1g5628 1 98714020 98715651 ECH
Lja4g2224 4 24447806 24449252 Lja1g5628 1 98714020 98715651 PCT