Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2197 ATGAAGCGAACCAGACCAACAAAGCTCGACACATTCACCAGGCAACGATCCTTCCACATTCTCATCGCCATTGCAATTCTCTACCTCCTCTTGTTCACCCTCGAATTCCCCTTCTTCTTCTCCACAACCCGCGCCACTCCGCGACTCTCGGAACAACCGAGTCAGACCCAGCAACCCTTTCGCCGCCACGACGTGGTGGTGTCCGGGTTGGTCCTAAACGACGCCGCATTCAGTTCGGAGTTTCACCGATCCGCGTGCCGAGAGGGGAAGCGGGTCTGGAAGAAGCTTGTATCAGGGGACCCGCGAATCGCTGCTCCGAAGCCGCAGAACCGATCCGGGTCGTGTCCGAGGTCCGTTACGGTGACCGGGTCGGAGTTTTCGCGGCGGGGGAGCGTGGTGGTGGTTCCTTGTGGGCTGACGTTGGGGTCTCATGTAACGGTGGTTGGGAGGCCGTTGAGGGGGGAGGGGAAGATGAGTCATTTTGTGATGGAGTTGCTGGGGTTGAAGACGGTGGAAGGGGAGGACCCGCCGAGGATCTTGCATTTCAATCCGAGGTTGAGAGGGGATTGGAGTGGGAAGCCGGTGATTGAGCTCAACAACCGTTATCGCATGCAGTGGGGCTCGGCGTTGCGCTGTGATGGGTCCAAATCAAGGGCTGAGGAAGATACTGTTGATGAGCTGGTGAAGTGTGAGAAGTGGATTGGGGGAGAAGACAGGGAAGAAATGGAGTCTAAATCAGCATGGTGGCTGAAGAGACTGATAGGCCGGACCAAAAAAATACCAGTTGACTGGCCATTCCCATTTTCTGAGGACAAGCTATTTGTTCTTACTCTTAGTGCTGGATTGGAGGGCTATCATATTAATATTGATGGGAGGCATGTGACCTCTTTTCCTTATCGCACTGGCTTTACTCTTGAGGATGCCACTGGCCTTACTTTGAGTGGAGATATTGATGTCCACTCTATTTTCGTTGCCTCATTGCCTTCATTGCATCCTAGTATATCCCCGCAGCAGCATCTTGAATTTTCAACCATGTGGTGTGCTCCAACTGTTCCTGACTCTGGCGTGGAATTGTTCATTGGCGTCCTCTCTGCTGGAAATCATTTTGCTGAACGGATGGCCGTGAGGAAGTCATGGATGCAACATAGCCTTATCAAATCTTCAGAAGTGGTTGCTCGTTTCTTTGTAGCACTGCATCCGAGAGTAGAGGTTAATGTAGAGTTGAAGAAAGAAGCAGAATTTTTTGGGGATATTGTTATAGTTCCATACATGGATAACTATGACCTTGTTGTGTTGAAAACAGTAGCCATATGTGAATATGGGCTTCGCACAGTTTCAGCCGAGTATATCATGAAAGGTGATGATGACACTTTTGTAAGAGTGGATGCTGTTATAAATGCAGCAAGGAATGCTCCGGAATCTATGAGCTTTTATATTGGGAACATTAATTACCGCCACAGACCCTTGCGGCATGGTAAATGGGCTGTTACATACGAGGAGTGGCCAGAAGCGATTTACCCACCCTATGCTAATGGACCAGGGTATATTTTGTCTTCTAGTATAGCACATTTCGTGGTATCTCAATTCGAGTCGCATAAATTAAGGTTATTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACAGCACCAGACCAGTATACTATTGGCATAGCTTCAAATTCTGTCAGTATGGATGTGTAGAAGATTATTACACAGCCCATTACCAATCTCCTAGGCAGATGATGTGCCTCTGGGATAAATTGCAGAAGCAGACAAGGCCTCAGTGCTGCAACATGAGATAG 1815 0.4887 MKRTRPTKLDTFTRQRSFHILIAIAILYLLLFTLEFPFFFSTTRATPRLSEQPSQTQQPFRRHDVVVSGLVLNDAAFSSEFHRSACREGKRVWKKLVSGDPRIAAPKPQNRSGSCPRSVTVTGSEFSRRGSVVVVPCGLTLGSHVTVVGRPLRGEGKMSHFVMELLGLKTVEGEDPPRILHFNPRLRGDWSGKPVIELNNRYRMQWGSALRCDGSKSRAEEDTVDELVKCEKWIGGEDREEMESKSAWWLKRLIGRTKKIPVDWPFPFSEDKLFVLTLSAGLEGYHINIDGRHVTSFPYRTGFTLEDATGLTLSGDIDVHSIFVASLPSLHPSISPQQHLEFSTMWCAPTVPDSGVELFIGVLSAGNHFAERMAVRKSWMQHSLIKSSEVVARFFVALHPRVEVNVELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGLRTVSAEYIMKGDDDTFVRVDAVINAARNAPESMSFYIGNINYRHRPLRHGKWAVTYEEWPEAIYPPYANGPGYILSSSIAHFVVSQFESHKLRLFKMEDVSMGMWVEQFNSTRPVYYWHSFKFCQYGCVEDYYTAHYQSPRQMMCLWDKLQKQTRPQCCNMR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2197 604 CDD GLECT 135 323 IPR001079 GO:0030246
Lja4g2197 604 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 131 325 IPR001079 GO:0030246
Lja4g2197 604 SMART Gal_bind_lectin_2 135 324 IPR001079 GO:0030246
Lja4g2197 604 Gene3D - 131 323 - -
Lja4g2197 604 SUPERFAMILY Concanavalin A-like lectins/glucanases 133 324 IPR013320 -
Lja4g2197 604 Pfam Galactoside-binding lectin 133 323 IPR001079 GO:0030246
Lja4g2197 604 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 71 604 - -
Lja4g2197 604 Gene3D - 354 600 - -
Lja4g2197 604 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 71 604 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja4g2197 604 Pfam Galactosyltransferase 371 551 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2197 Lja-Chr4 23677812 23681524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2197 8 604 Glycosyltransferase AT1G74800 60.091 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2197 K20843 - gmx:100800292 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2197 4 23677812 23681524 Lja4g2197 4 23677812 23681524 ECH
Lja4g2197 4 23677812 23681524 Lja1g5600 1 98085089 98088666 PCT