Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5600 ATGAAGAGAAAGTTCGACGGTTTTGTTCCGTTCACCAGAAAACGCCCGATTCAGTTTCTGATCGGCGTTGCTCTCTTGTATCTCTTACTTGTCACACTCGAAATCCCCATCGTTTTCTCCGGCGGCTTCGCCACCGTCACCGCTCGCTCTACGCGACTACTCACCGAGGAGGACCCACAGCAACGTCAAGCCCCGACCCGACCCGAAAAATCCGTCTCCAACGCCCACGCCCCGAGGACTCAAAATCAACGCGGAATCGGAATCGTCTCCGGGTTGGTGTTAAACGACGCCGCTTTCGACCCGAGTCGGAAGGACGGGTCGTCGGAGCTCTACAAGCTCGCGAAAACCGCGCGCGAGGTGGGGTTGAGCTTATGGGGGGATATCCGGTCTGGGAGAGCCGTTGCGGCGAAGCCTGAGAATCGGACCGGGTCGTGCCCCGGTTCGGTGTCGTTGTCTGGTTTGAATTTTTCTGGTGTGGCGGCGCTGCCGTGTGGGCTCACATTGGGGTCTCATGTGACGGTGGTTGGGGTTGCGAAGGCGGCGAGGCCGGATTATGAGTCGAAGATTGCGGCGGTGAGGGATGGGGATGGGCCGGCGATGGTTTCGCAGTTTGTGGTGGAGTTGCAGGGGTTGAAGACGGTGGAGGGGGAGGATCCTCCGAGGGTTTTTCACTTCAACCCGAGGTTGAAGGGTGATTGGAGTGGGAAGCCGGTGATTGAGCTCAACACGTGTTACCGTATGCAGTGGGGTTCGGCTCTCCGGTGTGATGGTTGGAAATCGAAGGCTGATGATGATACCGTTGATAGGATGGTGAAGTGTGAGAAATGGATTAGGGATGATGGAGAAAGCGGGGAGGAGTCAAAGGCAACGTGGTGGTTGAATAGATTGATAGGGCGTACCAAGAAAGTTACAGTTGACTGGCCATTCCCTTTCGCTGAGAACAAGCTTTTTGTTCTTACTATTAGTGCTGGGTTGGAGGGGTATCATGTAACTGTTGATGGGAGGCACGTTGCCTCTTTTCCTTATCGCACTGGATTTACTCTTGAGGATGCTACTGGACTTTTTGTGAGTGGAGACATTGATGTCCACTCTATATTTGCAGCCTCTTTGCCTTCATCACATCCTAGTTTTGCCCCTCAGCGGCATCTTGAATTCTCCCCCAGATGGCGTGCCCCGCCACTTCCTGACTCTGGTGTTGAATTGTTCATTGGCGTCCTCTCGGCTGGAAACCATTTTGCGGAGCGGATGGCTGTAAGAAAGTCATGGATGCAGCATAGGCTCATGAAATCTTCCGTTGTGGCTGCTCGTTTCTTTGTAGCACTGCATTCAAGACAAGAAATTAACATTGAGTTGAAGAAGGAAGCAGAATATTTCGGTGATATTGTTATAGTGCCTTACATGGATAACTACGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCATACAGTGTCTGCGAAGTATATCATGAAAGGTGATGATGACACTTTTGTGAGAGTGGATGCTGTTATCGATGAAGCAAGGAAGGTTCCGGATGATACCAGTTTTTACATTGGGAACATAAATTACTACCACAAACCTTTGCGCTATGGTAAATGGGCAGTGACATACGAGGAATGGCCAGAAGAGGATTATCCACCCTATGCTAATGGACCGGGTTATATTTTGTCATCGGATATCGCACGCTACATTGTATCTGAATTTGAGATGCATAAATTAAGGTTATTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTTGAGCAATTTAACAGCTCAAAACCGGTACAATACATGCACAGCTTGAAATACTGCCAGTTTGGTTGCATAGAAGGGTATTACACCGCCCATTACCAATCCCCGCGGCAGATGATGTGCCTGTGGGATAAATTGCAAAGGCAGACAAGGCCTCAGTGCTGCAATATGAGATGA 1944 0.501 MKRKFDGFVPFTRKRPIQFLIGVALLYLLLVTLEIPIVFSGGFATVTARSTRLLTEEDPQQRQAPTRPEKSVSNAHAPRTQNQRGIGIVSGLVLNDAAFDPSRKDGSSELYKLAKTAREVGLSLWGDIRSGRAVAAKPENRTGSCPGSVSLSGLNFSGVAALPCGLTLGSHVTVVGVAKAARPDYESKIAAVRDGDGPAMVSQFVVELQGLKTVEGEDPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADDDTVDRMVKCEKWIRDDGESGEESKATWWLNRLIGRTKKVTVDWPFPFAENKLFVLTISAGLEGYHVTVDGRHVASFPYRTGFTLEDATGLFVSGDIDVHSIFAASLPSSHPSFAPQRHLEFSPRWRAPPLPDSGVELFIGVLSAGNHFAERMAVRKSWMQHRLMKSSVVAARFFVALHSRQEINIELKKEAEYFGDIVIVPYMDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVRVDAVIDEARKVPDDTSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIARYIVSEFEMHKLRLFKMEDVSMGMWVEQFNSSKPVQYMHSLKYCQFGCIEGYYTAHYQSPRQMMCLWDKLQRQTRPQCCNMR* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5600 647 Gene3D - 397 642 - -
Lja1g5600 647 MobiDBLite consensus disorder prediction 54 80 - -
Lja1g5600 647 Pfam Galactosyltransferase 414 594 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja1g5600 647 SMART Gal_bind_lectin_2 162 367 IPR001079 GO:0030246
Lja1g5600 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 160 366 IPR013320 -
Lja1g5600 647 Gene3D - 151 275 - -
Lja1g5600 647 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 368 IPR001079 GO:0030246
Lja1g5600 647 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 6 647 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja1g5600 647 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 6 647 - -
Lja1g5600 647 Gene3D - 284 369 - -
Lja1g5600 647 Pfam Galactoside-binding lectin 160 366 IPR001079 GO:0030246
Lja1g5600 647 CDD GLECT 159 366 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5600 Lja-Chr1 98085089 98088666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5600 4 647 Glycosyltransferase AT1G74800 63.772 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5600 K20843 - gmx:100816777 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2197 4 23677812 23681524 Lja1g5600 1 98085089 98088666 PCT