Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2175 ATGATCAGCTCTCCGGGGATTTATTTTGATATTGGGAAGAAGGCTAAAGGTGTTCTTCACAAGGACTATGTTCAACAACCACCAATTCACTTTCACTACCAATTCATGGACTGGAATATGGACCTCGCTTGTCAAGTTGAAGAAATTGTACCTGGATTCAAGAGCCTTTTCAAATGTACCATACCTGATTCTGGGAAGGTGGAACTACGATACTTGAACAATTTTATTGGGATTACTGGATGCATTGGATTAAGAGGAAACATAGAAAGAGGATATGATCCTGTTCTTAACTTCTCAGGCCTTATAGGAACAAGCCTTCTGTCACTTGGAGCCAATGTTGCTTTTGATATACCAACAAGAACAATCGACAAGCTGAATGCTGGCTTCAACTTCAAAAGTTCCTTCCTTGATGCTTCCTTGACCATGCATGATAGGTTTGACACACTGAAAGCCACCTGTTATCATGAAGTGAACCCCCTAACCAAGACTGCCATTGCAGCTGAGGTAAAGTACAGCTTGTCAATGAAGGAAACTGGTGTTACCATTGGTGCTCAGCATGCAATTTTTCCTCAAACTTTGGTAAAGGCTCGATTCGACACATCTGGAAATGCAGGTGCTGTTATTCAACAAGGGTTTTGGCAGAGATTTTTCATAACTATGGCTGGAGAAGTGGATTTTGGGGACCAAACTACCCATCCCAAGGTTGGAGTATCCATGGCTCTGAAATAG 729 0.4198 MISSPGIYFDIGKKAKGVLHKDYVQQPPIHFHYQFMDWNMDLACQVEEIVPGFKSLFKCTIPDSGKVELRYLNNFIGITGCIGLRGNIERGYDPVLNFSGLIGTSLLSLGANVAFDIPTRTIDKLNAGFNFKSSFLDASLTMHDRFDTLKATCYHEVNPLTKTAIAAEVKYSLSMKETGVTIGAQHAIFPQTLVKARFDTSGNAGAVIQQGFWQRFFITMAGEVDFGDQTTHPKVGVSMALK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2175 242 Pfam Eukaryotic porin 38 236 IPR027246 GO:0005741|GO:0055085
Lja4g2175 242 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 242 IPR001925 GO:0005741|GO:0008308|GO:0098656
Lja4g2175 242 Gene3D Porin 2 242 IPR023614 -
Lja4g2175 242 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2175 Lja-Chr4 23421331 23423360 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2175 K15040 - gmx:100787061 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2896 1 35009049 35014104 Lja4g2175 4 23421331 23423360 ECH
Lja2g1642 2 16328033 16330866 Lja4g2175 4 23421331 23423360 ECH
Lja4g2700 4 39564927 39567587 Lja4g2175 4 23421331 23423360 ECH
Lja4g2175 4 23421331 23423360 Lja4g2175 4 23421331 23423360 ECH