Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1642 ATGGCGAAGGGTCCCGGTCTCTACACTGACATCGGCAAGAGAGCCAGAGATCTTCTGTTCAAGGACTACCACAGTGACCAGAAATTCACCATCACCACCTATTCCCCTACTGGAGTTGCTATAACCTCATCTGGGATCAAGAAAGGTGAGCTTTTTGTGGCTGATGTTAATACCCAGTTGAAGAACAAGAACATCACCACTGATCTCAAAGTGGACACTGACTCTAATCTCTTCACTACTGTCACTGTTGATGAGCCTGCTCCTGGCCTCAAGGCTATTTTTAGCTTCAGAGTTCCTGATCAAAGGTCTGGAAAGGTGGAACTTCAGTACTTGCATGACTATGCTGGCATAAGCACCAGCGTTGGGTTAACACCAAATCCAATTGTCAACTTCTCTGGTGTTGTAGGAACTAATGCACTTGCCGTTGGTACTGATCTTTCTTTTGATACCAAAATTGGGGAGTTAACAAAATTCAATGCTGGATTGAACTTCACCAAAGCTGATTTGATTGCCTCACTGACTGTGAATGACAAAGGTGATGCCTTGAATGCTTCATACTACCATATTGTCAATCCCTTGACCAACACAGCTTTTGGTGCTGAGGTAACTCATAGATTCTCAACCAATGAGAACACTCTCACACTTGGCACCCAGCATGCATTAGATCCATTGACCTCTGTGAAGGCTCGCGTCAACAACCTTGGCAAGGCAAATGCTCTTATCCAGCATGAGTGGCGTGCCAAGTCATTCTTCACCATTTCTGGGGAGGTTGACACTAAGGCCATTGAGAAAAGTGCAAAGATTGGGTTAGGTTTGGCTCTCAAACCTTGA 831 0.4513 MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQLKNKNITTDLKVDTDSNLFTTVTVDEPAPGLKAIFSFRVPDQRSGKVELQYLHDYAGISTSVGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNAGLNFTKADLIASLTVNDKGDALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANALIQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1642 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
Lja2g1642 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
Lja2g1642 276 Gene3D Porin 1 275 IPR023614 -
Lja2g1642 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Lja2g1642 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
Lja2g1642 276 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1642 Lja-Chr2 16328033 16330866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1642 K15040 - gmx:100802449 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1642 2 16328033 16330866 Lja4g2175 4 23421331 23423360 ECH
Lja2g1642 2 16328033 16330866 Lja2g1642 2 16328033 16330866 ECH
Lja1g2896 1 35009049 35014104 Lja2g1642 2 16328033 16330866 ECH
Lja4g2700 4 39564927 39567587 Lja2g1642 2 16328033 16330866 ECH