Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2131 ATGTTGATCGAACGCTTTGTTCCTGCAAGCGGCAGAAGAAGCATTCAGCAGCATGTGTTCACGCTATTGCAGAGCTGCAACAACATACAAAATCTCATTCAAATTCACAGCCAAGTAGTTCTCAACGGCCTCTCTCAGAAGACAAACATCATCACCAAGCTTCTATCATTCTACATTGCCTCTGATCAACTCCAACATGCCCACAAACTTTTCTCCACAATCGACAACCCAAGCACCACCGTTTGGAACCACATCATCAGAGGCTATGCTCGCAGCCACACTCCTTGGAAATCGGTGGAATGCTACAGACAAATGGTGTCAACTGAGGCTGAGCCTAATGGGTTCACATATTCGTTCCTCTTGAGTGCCTGTGTGCGAGGTGGGTTGCTGAGAGAAGGGGAACAGGTGCATGGCATTGTTCTGGTAAAAGGGTATTGCTCCAATGTGTTTGTGGAGACGAATTTGATCAATTTCTATGCGGGGCGTGGTGGGGTTGAGCAAGCACGCCATGTGTTTGATGGTATGGGTCAGAGAAGTGTTGTTAGCTGGAATTCTATTCTTGCTGGGTATGTTAGTTGTGGTGATTTTGATGGGGCAAGAAGGGTTTTTGACGAAATGCCAATAAGGAATGTGGTGTCTTGGACGACCATGATTGCTGGGTGTGCTCAGAAAGGGAGGTGTAAACAGGCTTTGTCGTTGTTTGGTGAGATGAGGAGAGCTCGTGTGGAATTGGATCAGGCGGCGTTGGTGGCTGCTTTATCAGCTTGTGCTGAATTAGGGGATCTAAAATTGGGAAGATGGATCCATTGGTATGTTCAGCAGAGGATTGTTGCAAGGAACCAGCAGCAACCCTCTGTGCGCTTGAACAACGCACTCATACACATGTATGCTAGTTGTGGAGTCATCGGTGACGCTTATCAAGTGTTTACCAAGATGCCTCAGAGAAGCACGGTGTCCTGGACCAGCATGATCATGGCTTTTGCTAAACAAGGGCTTGGGAAGGAAGCCCTTGGTCTGTTTAAGACTATGGTTAGTGATGGTGCGGGAGTTGATGGAGTGAGACCTGATGCAATAACCTTGATTGTAGTTCTCTGTGCTTGCTGCCATGCAGGATTTGTAGATGAAGGACGCCGGATTTTCGCTTCCATGAACCGTACTTGGGGAATCAGCCCGAGGATTGAACACTACGGATGCATGGTTGACCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCACATGGACTTATTGAAAACATGCCTTTGAAACCGAATGATGCACTATGGGGCGCCCTTCTTGGTGGTTGCCAAATACACAAGAATTCAGAGCTAGCATCGGTAGTGGAACCCAAGTTAGTAGCTGAGCTTGACACTGATGGAGCCGCAGGCTATCTTGTGCTCTTGTCAAATATTTATGCTTTTGCCAAAAGGTGGCAGGATGTTATTGCAGTGAGACAGAAAATGATTGAGATGGGTGTGAAAAAGCCTCCAGGACAAAGTTGGATCCAAATTAATGGAGTTGTCCATGATTTCGTGGCGGGGGACATGACTCATAAGCATTCATATTTTATATATGAAATCCTTTCTGAAATCATCAAGCAATCCCATGTGGATAGCTATGAACCAGACATAACAGGGGCTTTTCTTGGATGTTAA 1653 0.4646 MLIERFVPASGRRSIQQHVFTLLQSCNNIQNLIQIHSQVVLNGLSQKTNIITKLLSFYIASDQLQHAHKLFSTIDNPSTTVWNHIIRGYARSHTPWKSVECYRQMVSTEAEPNGFTYSFLLSACVRGGLLREGEQVHGIVLVKGYCSNVFVETNLINFYAGRGGVEQARHVFDGMGQRSVVSWNSILAGYVSCGDFDGARRVFDEMPIRNVVSWTTMIAGCAQKGRCKQALSLFGEMRRARVELDQAALVAALSACAELGDLKLGRWIHWYVQQRIVARNQQQPSVRLNNALIHMYASCGVIGDAYQVFTKMPQRSTVSWTSMIMAFAKQGLGKEALGLFKTMVSDGAGVDGVRPDAITLIVVLCACCHAGFVDEGRRIFASMNRTWGISPRIEHYGCMVDLLSRAGFLDEAHGLIENMPLKPNDALWGALLGGCQIHKNSELASVVEPKLVAELDTDGAAGYLVLLSNIYAFAKRWQDVIAVRQKMIEMGVKKPPGQSWIQINGVVHDFVAGDMTHKHSYFIYEILSEIIKQSHVDSYEPDITGAFLGC* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2131 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 209 IPR002885 -
Lja4g2131 550 PANTHER OS09G0411600 PROTEIN 10 528 - -
Lja4g2131 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Lja4g2131 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Lja4g2131 550 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Lja4g2131 550 Pfam PPR repeat family 77 125 IPR002885 -
Lja4g2131 550 Gene3D Tetratricopeptide repeat domain 350 520 IPR011990 GO:0005515
Lja4g2131 550 Gene3D Tetratricopeptide repeat domain 271 349 IPR011990 GO:0005515
Lja4g2131 550 TIGRFAM PPR: pentatricopeptide repeat domain 318 347 IPR002885 -
Lja4g2131 550 TIGRFAM PPR: pentatricopeptide repeat domain 362 391 IPR002885 -
Lja4g2131 550 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Lja4g2131 550 TIGRFAM PPR: pentatricopeptide repeat domain 181 210 IPR002885 -
Lja4g2131 550 Pfam PPR repeat 395 419 IPR002885 -
Lja4g2131 550 Pfam PPR repeat 181 209 IPR002885 -
Lja4g2131 550 Pfam PPR repeat 212 241 IPR002885 -
Lja4g2131 550 Pfam PPR repeat 290 315 IPR002885 -
Lja4g2131 550 Pfam PPR repeat 362 384 IPR002885 -
Lja4g2131 550 Pfam PPR repeat 318 347 IPR002885 -
Lja4g2131 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Lja4g2131 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 528 - -
Lja4g2131 550 Gene3D Tetratricopeptide repeat domain 9 156 IPR011990 GO:0005515
Lja4g2131 550 Gene3D Tetratricopeptide repeat domain 157 265 IPR011990 GO:0005515
Lja4g2131 550 Pfam E motif 438 502 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2131 Lja-Chr4 22842799 22844451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2131 10 542 Glycoside Hydrolase AT3G49170 31.238 1.13e-82 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2131 - - aip:107610465 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2838 1 34188344 34190064 Lja4g2131 4 22842799 22844451 ECH
Lja4g2131 4 22842799 22844451 Lja4g2131 4 22842799 22844451 ECH