Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2838 ATGATCAGAAAAACAAGAGCCATCACCATTACCAACCTCGTAACCCTCAAACAGATCCACGCTTTAATCATCATCAACGGTTTCACTTCAAACATTAGTTTCCTCAGAAAACTTGTCTCCGCCGCCGCCACGTCACTGGTGGGCCCCAGAGCCGCCGCCACCGTCGCAGAATATGCACACCAAATGTTCGCTCAAATTCCCCAACCAGACACCTTCATGTGGAACACCATGATCCGAGGCTCATCTCAGAGCCTCGATCCCCTGCGGGCGGTGGCATTGTACACCCAGATGGACCACCGTTCTGTGAAGCCTGATCACTTCACCTTCCCCTTCGTCCTCAAGGCTTGCACCAAGCTTCTCTGGGTCAACACCGGTTCAGCGGTTCATGGTCGGGTTTTCAGGCTGGGGTTTGGTTCAGACCGGTTTGTGAGGAATACCCTTTTGGTATTTCACGCTAAATGTGGAGATTTGAAGGTTGCCACTGAAATATTTGATGATTCGGATAAGGGTGATGTGGTTGCTTGGTCTGCACTTATTGCTGGGTATGCTAAACGAGGGGATTTGAAGGTTGCGCGCAGGTTGTTTGATCAAATGCCTGTCAAAGATTTGGTTGCATGGAACGTGATGATCACCGGGTATGCCAAGCAAGGGGAGATGGTTAGCGCAAGGAAGCTTTTCGATGAGGCTCCCGTGAGGGATGTGGTTAGTTGGAACGCAATGATTGCTGGTTACGTGCTTTGCAACTTGAACCAACCGGCATTGGATTTGTTTGATGAGATGAGTGGAATCGGGGTTCGCCCGGATGAAGTGACAATGCTGAGCTTGTTGTCTGCTTGTGTCGAGTTAGGGGATTTAGAAAATGGTCGAAAGATGCATGCCAAGGTCATGGAGATGAGCAGGGGAGTGTTGAGCACGTTGTTGGGGAATGTTCTTGTTGATATGTATGCTAAGTGTGGAAGCATTGGAGAAGCGCTTCATGTGTTTTGGTCAATAAGAGATAAAGATGTGACCTCGTGGAACTCGGTGATTGGCGGGTTGGCTTTTCATGGCCATGCTGAGGAATCACTTGGTCTGTTTAGGGAGATGCTAAAGAGCAAGATTTGTCCAAATGAGATCACATTTGTTGGTGTTTTGGTAGCTTGCAGTCATGCAGGGAAAGTTGATGAGGGTTATCAATATTTTGATCTTATGAGAAGTGAGTATAAGATTGAGCCAAACATTAGGCATTGTGGGTGCATGGTGGACATGCTAGGACGTGCGGGACTTTTGAAGGAAGCATTTGACTTCATAGCCTCCATGAAGATTGAACCTAATGCAATTGTTTGGAGGACTTTGCTTGGGGCTTGCAAAGTTCATGGGGATATGGAGTTGGCAAAACACGCGAATGAGAAGCTGCTTCAAATGAGAACGGACCAGAGTGGTGACTATGTGCTGTTGTCAAACACATATGCTTCTCGAGGTGAGTGGGATGGGGTTGCGAAGGTAAGGAAGTTAATGGATGATAGTGGTGTGACAAAAAATCGTGGTTCAAGCTTCGTTGAAGCATATACCTGA 1554 0.4762 MIRKTRAITITNLVTLKQIHALIIINGFTSNISFLRKLVSAAATSLVGPRAAATVAEYAHQMFAQIPQPDTFMWNTMIRGSSQSLDPLRAVALYTQMDHRSVKPDHFTFPFVLKACTKLLWVNTGSAVHGRVFRLGFGSDRFVRNTLLVFHAKCGDLKVATEIFDDSDKGDVVAWSALIAGYAKRGDLKVARRLFDQMPVKDLVAWNVMITGYAKQGEMVSARKLFDEAPVRDVVSWNAMIAGYVLCNLNQPALDLFDEMSGIGVRPDEVTMLSLLSACVELGDLENGRKMHAKVMEMSRGVLSTLLGNVLVDMYAKCGSIGEALHVFWSIRDKDVTSWNSVIGGLAFHGHAEESLGLFREMLKSKICPNEITFVGVLVACSHAGKVDEGYQYFDLMRSEYKIEPNIRHCGCMVDMLGRAGLLKEAFDFIASMKIEPNAIVWRTLLGACKVHGDMELAKHANEKLLQMRTDQSGDYVLLSNTYASRGEWDGVAKVRKLMDDSGVTKNRGSSFVEAYT* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2838 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lja1g2838 517 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 185 217 - -
Lja1g2838 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Lja1g2838 517 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 186 - -
Lja1g2838 517 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 215 515 - -
Lja1g2838 517 Gene3D Tetratricopeptide repeat domain 15 170 IPR011990 GO:0005515
Lja1g2838 517 Pfam E motif 452 514 IPR046848 -
Lja1g2838 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Lja1g2838 517 Pfam PPR repeat 173 201 IPR002885 -
Lja1g2838 517 Pfam PPR repeat 411 434 IPR002885 -
Lja1g2838 517 Pfam PPR repeat 204 228 IPR002885 -
Lja1g2838 517 Pfam PPR repeat family 334 381 IPR002885 -
Lja1g2838 517 Pfam PPR repeat family 232 279 IPR002885 -
Lja1g2838 517 Pfam PPR repeat family 69 117 IPR002885 -
Lja1g2838 517 Gene3D Tetratricopeptide repeat domain 310 515 IPR011990 GO:0005515
Lja1g2838 517 Gene3D Tetratricopeptide repeat domain 171 309 IPR011990 GO:0005515
Lja1g2838 517 PANTHER OS03G0168550 PROTEIN 9 186 - -
Lja1g2838 517 PANTHER OS03G0168550 PROTEIN 185 217 - -
Lja1g2838 517 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Lja1g2838 517 TIGRFAM PPR: pentatricopeptide repeat domain 173 203 IPR002885 -
Lja1g2838 517 TIGRFAM PPR: pentatricopeptide repeat domain 204 232 IPR002885 -
Lja1g2838 517 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Lja1g2838 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Lja1g2838 517 PANTHER OS03G0168550 PROTEIN 215 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2838 Lja-Chr1 34188344 34190064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2838 57 514 Glycoside Hydrolase AT3G49170 31.610 4.13e-81 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2838 - - gmx:100790367 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2838 1 34188344 34190064 Lja4g2131 4 22842799 22844451 ECH
Lja1g2838 1 34188344 34190064 Lja1g2838 1 34188344 34190064 ECH