Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2088 ATGGCAGCTCTTGCTCTTGTAGTGCTTCTTCTGGCCACTCACTTCCATTCCAATCTTGCTGCAAATGCTGCTACTTGGTGCATTTGCAAGGATGCAAGCGATGCAATCCTGCAGAAGACATTGGATTATGCTTGTGGAGCTGGTGCTGATTGCAACCCACTCCATACAAACGGGCCTTGTTTCCAACCAAACACTGTCAGAGCTCATTGCAGCTATGCAGTGAATAGCTTTTTCCAGAAGAAAGGTCAAGGACAAGGGACCTGTGACTTTGCAGGAACAGCCACTGCTATTACATCTAACCCCAGCATTGGTAGTTGTGTCTACCCTTCAAGCGCTAGCGCTTCTGGCACTAGTACAACCCCAGTGACAACTACACCATCCTTGGGCACTACCCCTTCTTCCACAGGCACTCCATCAACAACCACAGGCACTCCATCAACAACCATTGGTATTCCATCAACAACCACTGGCACCACTCCATATAGCACAACTCCTGGGGTGTTAGGTGGGATTGGCACTGGTATGGGGCCTTCTGGAACTGGCATTGATGACAGTCATGGCGGGCTTAGACTTTTGGACATTGCTTTGTTCTCTCCATTCTCAATCACCCTCTTCTATGGCTTGATAATGCTTTTGTGGGCTTGA 645 0.4884 MAALALVVLLLATHFHSNLAANAATWCICKDASDAILQKTLDYACGAGADCNPLHTNGPCFQPNTVRAHCSYAVNSFFQKKGQGQGTCDFAGTATAITSNPSIGSCVYPSSASASGTSTTPVTTTPSLGTTPSSTGTPSTTTGTPSTTIGIPSTTTGTTPYSTTPGVLGGIGTGMGPSGTGIDDSHGGLRLLDIALFSPFSITLFYGLIMLLWA* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2088 214 Pfam X8 domain 25 95 IPR012946 -
Lja4g2088 214 Gene3D - 19 119 - -
Lja4g2088 214 SMART X8_cls 25 108 IPR012946 -
Lja4g2088 214 MobiDBLite consensus disorder prediction 114 163 - -
Lja4g2088 214 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3-LIKE ISOFORM X1 1 207 - -
Lja4g2088 214 PANTHER BETA-1,3 GLUCANASE 1 207 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2088 Lja-Chr4 22442261 22446444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2088 26 117 Miscellaneous Gene Families AT2G16230 46.237 1.06e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2088 - - gmx:100500078 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5582 1 97620819 97626323 Lja4g2088 4 22442261 22446444 ECH
Lja4g2088 4 22442261 22446444 Lja4g2088 4 22442261 22446444 ECH