Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2086 ATGGAGAGTGGTCAACGGCGTGTGGGTTTACTCTACGACGAGAGGATGTGCAAGCACCACGTACCAGACGACGGTTACCACCCCGAAACCCCTGATCGCATTAGGGTTATCTGGAACAAGCTTCAATCCACCGGAATTACTGACCGGTGTGTGATTTTGGAAGCCAAGAAAGCTGAGGACGAACAGTTGCTATCAGTTCATACCAAAAAACATGTTGATCTCATTAACAAGATTAGCTCAAAGCTATACGATTCGCGTAGGCTTAAGATCGCGCATAAATTGGATTCTGTTTACTTCAATGAGGGTTCTTCAGAAGCTGCTTATCTTGCTGCTGGCTCTGCTATAGAGGTTGTTAAAAGAGTGGCAAGCAGGGAGTTGCATTCTGCTGTTGCTGTTGTTAGACCTCCAGGTCATCATGCAGAACCAAATGAAGCCAAGGGATTTTGTCTGTTCAACAATGTGGCAGTTGCTGCATCTTATCTCTTAGATCAAAGGCCAGACTTAGGGGTAAAGAAAATTTTAATTGTTGACTGGGACATCCATCATGGAAACGGTACTCAAAAAATATTCCTGGATGATTCTCGAGTTCTATTCTTCTCCGTTCACAGGCATGAATTTGGGAGCTTTTATCCATCTAGTGATGATGGGTTTTATACCATGATTGGAAAAGGAGCAGGTGCTGGTTATAATATAAATGTGCCATGGGAGAATGGGAGATGTGGTGATGCAGACTACATTGCAGTGTGGGACCACATTTTGCTCCCTGTTGCCAAAGAATTTAGTCCAGACATAATTATAGTTTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTCTGGGCGGATGTCGTGTCACACCATTTGGTTATTCTGTTCTGTTAAAAAAGTTGCTGCATCTGGCTGAAGGTAGGGTTGTACTGGTTTTAGAAGGAGGTTATAATCTTGATTCAATTGCAAAATCAATGCATGCCTGTTTGGAAGTTTTGCTAGAAGACAAGCCTCTTATTGGATCCTCAGAGGCCTATCCATTTGAGTCTACATGGCGCGTCATTCAAGCGGTTCGGCAGGAGTTAAGTCCCTTTTGGCCAACACTTGCCTGTGAATTACCACAAAAATTAATTAGTCAAATAGCACCACCTCCGGATTCTCTTATTTCAAGCTCTGACTCAGAGACTGAGGATGACAAGGGCCAAATCAATTCAGAAAAACTTGCAGAGCTTCTTGAGGATGTTATAAAACCACTTTCCAAGCTGAATGTTGATGCAGATGAAGAGACTGATGCTTCTAGTTCTTGGCGATCAGAGTTGTCAAATGTTTGCATATGGTATGCCTCATATGGATCAAATATGTGGAAGTCAAGATTATCTTGTTACATAGCAGGTGGACAGGTGGAAGGTATGCAGAAGCACTGTCCCGGTTCAGTAAACAAAACTCTGCCAAAGGAGATCCTGTGGAAGACTTTCCCTTGCCATATATTTTTCGGTCGCGATTTCTCCCGTTCTTGGGGTCCTGGAGGGGTTGCGTTTCTTAATCCTGAGAGAAACATGCAGCACAGCACCTACTTGTGCCTGTACAAAATTTCGCTAGAGCAGTTCAATGATATTTTATTTCATGAAAATGGTTTAAGCCTTAATGCTGGTTCACCTTTATTTGATACAACTACCCTGAATACTATCTCTGTCAAGGAGTTCGATTCTCAGGAGATTGTCAAGGGTGGTTGGTATGGTAATGTCGTCTACTTAGGAAAGGAGCAGGATATTCCAATAATTACCATGACGTGTTCGCTTCATGATATTGAGCGCTTCAAATCTGGAAAGCTACCATTGCGTGCGCCGAATAAAGCATATGCCAACACCTTAATAAAAGGGTTGGTGGAGGGAGAGCAGCTTTCAGAGGATGAAGCCATCGCTTACATAGAAGCTGCTGCTAAATCACTATGA 1938 0.4324 MESGQRRVGLLYDERMCKHHVPDDGYHPETPDRIRVIWNKLQSTGITDRCVILEAKKAEDEQLLSVHTKKHVDLINKISSKLYDSRRLKIAHKLDSVYFNEGSSEAAYLAAGSAIEVVKRVASRELHSAVAVVRPPGHHAEPNEAKGFCLFNNVAVAASYLLDQRPDLGVKKILIVDWDIHHGNGTQKIFLDDSRVLFFSVHRHEFGSFYPSSDDGFYTMIGKGAGAGYNINVPWENGRCGDADYIAVWDHILLPVAKEFSPDIIIVSAGFDAAVGDPLGGCRVTPFGYSVLLKKLLHLAEGRVVLVLEGGYNLDSIAKSMHACLEVLLEDKPLIGSSEAYPFESTWRVIQAVRQELSPFWPTLACELPQKLISQIAPPPDSLISSSDSETEDDKGQINSEKLAELLEDVIKPLSKLNVDADEETDASSSWRSELSNVCIWYASYGSNMWKSRLSCYIAGGQVEGMQKHCPGSVNKTLPKEILWKTFPCHIFFGRDFSRSWGPGGVAFLNPERNMQHSTYLCLYKISLEQFNDILFHENGLSLNAGSPLFDTTTLNTISVKEFDSQEIVKGGWYGNVVYLGKEQDIPIITMTCSLHDIERFKSGKLPLRAPNKAYANTLIKGLVEGEQLSEDEAIAYIEAAAKSL* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2086 645 Gene3D - 429 644 - -
Lja4g2086 645 PANTHER HISTONE DEACETYLASE 5 595 - -
Lja4g2086 645 Pfam Histone deacetylase domain 27 327 IPR023801 -
Lja4g2086 645 PANTHER BNAA09G05590D PROTEIN 5 595 - -
Lja4g2086 645 PRINTS Histone deacetylase superfamily signature 135 158 IPR000286 -
Lja4g2086 645 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Lja4g2086 645 Gene3D Histone deacetylase domain 2 377 IPR037138 -
Lja4g2086 645 SUPERFAMILY Arginase/deacetylase 6 362 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2086 Lja-Chr4 22422955 22431139 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2086 K11406 - gmx:100788831 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2086 4 22422955 22431139 Lja4g2086 4 22422955 22431139 ECH
Lja4g2086 4 22422955 22431139 Lja1g5526 1 95389235 95391989 PCT