Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2027 ATGTCAAAGCTCCAAGTTCAACAACTCAACCAGTTAAGGGAGATTTTCGCGCGATTCGACATGGACTCAGATGGCAGTTTAACCATGTTAGAGCTCGCGGCGCTTCTCCGGTCACTGGGGCTCAAGCCCTCAGGGGACCAACTCCATGATCTGTTATCCAACATGGACTCAAATGGCAATGGTTCTGTGGAGTTTGATGAATTGGTGAGGACCATTTTGCCTGACTTGAAGAATAATGCAGAGGTATTGCTGAATCAAGAACAGCTTCTTGATGTGTTTAAGTGCTTCGATCGCGACAGCAATGGCTTCATTTCAGCTGCAGAATTGGCGGGGGCAATGGCCAAAATGGGCCAGCCCCTCACGTACAAAGAGCTCACGGAGATGATCAGAGAGGCTGACACGGATGGTGATGGTGTGATTAGCTTCAATGAGTTTAAAACCATCATGGCTCGCTCTGCCTCTGATTTCTTAGGCCTCAGCAATTGGAAAACTGAGCTTCAGCAATGA 507 0.4813 MSKLQVQQLNQLREIFARFDMDSDGSLTMLELAALLRSLGLKPSGDQLHDLLSNMDSNGNGSVEFDELVRTILPDLKNNAEVLLNQEQLLDVFKCFDRDSNGFISAAELAGAMAKMGQPLTYKELTEMIREADTDGDGVISFNEFKTIMARSASDFLGLSNWKTELQQ* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2027 168 CDD EFh 11 70 IPR002048 GO:0005509
Lja4g2027 168 CDD EFh 88 150 IPR002048 GO:0005509
Lja4g2027 168 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 160 - -
Lja4g2027 168 SMART efh_1 88 116 IPR002048 GO:0005509
Lja4g2027 168 SMART efh_1 47 75 IPR002048 GO:0005509
Lja4g2027 168 SMART efh_1 11 39 IPR002048 GO:0005509
Lja4g2027 168 SMART efh_1 124 152 IPR002048 GO:0005509
Lja4g2027 168 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Lja4g2027 168 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Lja4g2027 168 Gene3D - 105 165 - -
Lja4g2027 168 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lja4g2027 168 SUPERFAMILY EF-hand 4 151 IPR011992 -
Lja4g2027 168 PANTHER CALCIUM BINDING PROTEIN 3 160 - -
Lja4g2027 168 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Lja4g2027 168 Gene3D - 1 104 - -
Lja4g2027 168 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Lja4g2027 168 ProSitePatterns EF-hand calcium-binding domain. 133 145 IPR018247 -
Lja4g2027 168 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Lja4g2027 168 Pfam EF-hand domain pair 10 69 IPR002048 GO:0005509
Lja4g2027 168 Pfam EF-hand domain pair 87 149 IPR002048 GO:0005509
Lja4g2027 168 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2027 Lja-Chr4 21039258 21040363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2027 8 159 EF-hand Containing Proteins AT1G18530 79.605 3.24e-85 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2027 K13448 - gmx:100795885 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5419 1 91432952 91433440 Lja4g2027 4 21039258 21040363 ECH
Lja4g2027 4 21039258 21040363 Lja4g2027 4 21039258 21040363 ECH