Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5419 ATGTCTGAGCTTCAAGTTGATCAACTCGGCCAATTACGTGAAATCTTCGCCAGATTCGACATGGACTCCGACGGAAGCCTAACCATTCTCGAACTCGCCGCATTGCTGCGATCATTGGGGCTCAAACCCTCAGGCGATCAAATCCACATGCTGTTAACCAACATGGATTCAAACGCCAACGGGTTCGTGGAATTCCACGAGTTGGTGGACGCCATTTTGCCTGACATTAGTGCAGAAACGTTGTTGAATCAGGAGCTGCTGCTCGGGGTGTTCAAGTGCTTCGATCGCGACGGGAATGGATATATATCAGCCGCGGAGTTAGCCGGAGCAATGGCGAAAATGGGTCATGCTCTCACATATAGGGAGCTCACGGAGATGATCACGGAGGCGGATACAGATGGAGATGGTGTTATTAGCTTCAATGAGTTTGCCATTGTTATGGGTAGGTCAGCGGCGTCTGAGTTCTTAGGACATGCAGCATTGTGGTGA 489 0.5031 MSELQVDQLGQLREIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHMLLTNMDSNANGFVEFHELVDAILPDISAETLLNQELLLGVFKCFDRDGNGYISAAELAGAMAKMGHALTYRELTEMITEADTDGDGVISFNEFAIVMGRSAASEFLGHAALW* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5419 162 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Lja1g5419 162 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Lja1g5419 162 CDD EFh 90 144 IPR002048 GO:0005509
Lja1g5419 162 SMART efh_1 86 114 IPR002048 GO:0005509
Lja1g5419 162 SMART efh_1 11 39 IPR002048 GO:0005509
Lja1g5419 162 SMART efh_1 122 150 IPR002048 GO:0005509
Lja1g5419 162 SMART efh_1 47 75 IPR002048 GO:0005509
Lja1g5419 162 Pfam EF-hand domain pair 88 147 IPR002048 GO:0005509
Lja1g5419 162 Pfam EF-hand domain pair 11 71 IPR002048 GO:0005509
Lja1g5419 162 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Lja1g5419 162 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Lja1g5419 162 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Lja1g5419 162 Gene3D - 1 150 - -
Lja1g5419 162 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Lja1g5419 162 SUPERFAMILY EF-hand 3 147 IPR011992 -
Lja1g5419 162 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Lja1g5419 162 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Lja1g5419 162 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5419 Lja-Chr1 91432952 91433440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5419 7 155 EF-hand Containing Proteins AT1G18530 75.168 1.10e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5419 K13448 - aprc:113851957 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5419 1 91432952 91433440 Lja4g2027 4 21039258 21040363 ECH
Lja1g5419 1 91432952 91433440 Lja1g5419 1 91432952 91433440 ECH