Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1401 ATGAAACGGCTATCATTAGTTCAAGGTTTACTGAGAATGAAGAAGTGGTATGGAGGCTTGTTGATCACGGTTTTGGGTATGTCGTTGCTTCTATTCTACAGCCTTAAAGGAATTCAGCCACAGAAGCAGCCAGCAAAACAGTCAGCATACGGTTTTTTCAATAACCATCCACAAAATGGTTCTGTTAAAGAAAGCATCAGTCTTCCAGTAAACTCTTCTGATGTGGAACCAAATCAGGTACCAGAGCCAAGAAAAAAACCACACTTGATACATGTTGCAGGGCTTGATGACTTGTATGACATGAAAACAATTTCTGAAGGAGAGATGAATGTTTTGCTTGTTTGGACATACTTGCGTTCCTTGTTGTCACGGTCAGATTCCTTGCCTGAAACAGCTCAAGGAGTTAAAGAGGCTTCTGTAGCATGGAAAGAGTTGATTTCCACTATTGAAAAGGACAAGGCCTCTAAGATTAGTAAGATAGACAGTCCAGCATATAAAAAGTGCCCGTTCTCCGTGAGCACACTTGGCAAGACAATAGATGATAGTGGAATCACTCTGGATTTCCCCTGTGGTCTAGTTGTAGATTCTTCTATTACACTGATTGGCATCCCTAATGGACTGAACAGAAGTTTTCAGATTGACCTTGTCGGGCATGAGTTAGAAGAGGAGCCAAATCCTCCGATTATCTTACATTACAATGTCAGTGTTCCTGGAGAAAACATGACAGAGCAACCATACATTGTTCAAAATACTTGGACTAGTGATTTTGGGTGGGGAAAAGAGGAAAGGTGCCCAGCTCGAGGTTCTGCTAACATCCAAAAAGTTGATGGACTTGTTCTCTGCAACGTACAAGTTGTCGGGAGTAACAACGAAAATGTGGGTCAACCTACTAGTGATATACCTTCTAATAACTCCTCAGAAAGTGCACACAGAACTGCTAATTTCCCCTTTGCTGAGGGTAATCCTTTCACTGCCACATTATGGGTTGGTTCAGAGGGATTTCACATGACTGTGAATGGAAGGCATGAAACATCTTTTGCTTATAGGGAGAAGTTTGACCCATGGTTAGTCAGCACCGCTAAAGTAGCAGGCAGTTTAAGTCTCTTATCAGTCCTGGCTAAAGATTTACCTGTTACTGAAGATAATGATTTAGTTGTTGATGTTGAGAAACTGAAGGCTCCTTCTATTCCCAGAAAAAAACTTGTTTTGCTGATAGGAGTATTCTCTACTGGAAATAACTTTGAGCGTCGAATGGCCCTGAGGAGGTCTTGGATGCAATATGAGGCTGTACGTTCTGGGGAAGTTGCTGTCCGATTTTTCATTGGACTTCACAAGAAAGATATAGTTAACTTTGAGTTATGGAGTGAAGCTCAAGCATACGGGGATATTCAGTTAATGCCTTTTGTGGATTATTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCTTTTGTAAGGGTTGATGAAGTTCTTTCCAGCCTCAAAGGTAAGCCATCCGAAGGCCTCTTGTACGGTCTCATATCTTCTAAGTCATCTCCTCAGAGGGATAAAGACAGCAAGTGGTACATCAGTGAGAAGGAATGGCCACATGATATGTACCCACCATGGGCACATGGTCCTGGCTATGTCATCTCTCGGGACATAGCAAAGTTCATTGTCCGTGGCCACCACGAAAGAAAACTCAAGCTCTTTAAACTAGAAGACGTTGCCATGGGCATATGGATTGAACAGTTCAAGAATGGTGGTAAAGAAGTGCATTATGAGAATGATGAGAAGTTTTACAATGCTGGTTGTGAATCAAATTATATACTTGCCCATTATCAGAATCCAAGAATGGTTCTATGCCTTTGGGAGAAACTGCAGAAAGAACACCAACCAGCATGCTGTGAGTAG 1950 0.4144 MKRLSLVQGLLRMKKWYGGLLITVLGMSLLLFYSLKGIQPQKQPAKQSAYGFFNNHPQNGSVKESISLPVNSSDVEPNQVPEPRKKPHLIHVAGLDDLYDMKTISEGEMNVLLVWTYLRSLLSRSDSLPETAQGVKEASVAWKELISTIEKDKASKISKIDSPAYKKCPFSVSTLGKTIDDSGITLDFPCGLVVDSSITLIGIPNGLNRSFQIDLVGHELEEEPNPPIILHYNVSVPGENMTEQPYIVQNTWTSDFGWGKEERCPARGSANIQKVDGLVLCNVQVVGSNNENVGQPTSDIPSNNSSESAHRTANFPFAEGNPFTATLWVGSEGFHMTVNGRHETSFAYREKFDPWLVSTAKVAGSLSLLSVLAKDLPVTEDNDLVVDVEKLKAPSIPRKKLVLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVAVRFFIGLHKKDIVNFELWSEAQAYGDIQLMPFVDYYSLISLKTIAICIMGTKIIPSKYIMKTDDDAFVRVDEVLSSLKGKPSEGLLYGLISSKSSPQRDKDSKWYISEKEWPHDMYPPWAHGPGYVISRDIAKFIVRGHHERKLKLFKLEDVAMGIWIEQFKNGGKEVHYENDEKFYNAGCESNYILAHYQNPRMVLCLWEKLQKEHQPACCE* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1401 649 Pfam Galactoside-binding lectin 185 372 IPR001079 GO:0030246
Lja4g1401 649 Pfam Galactosyltransferase 415 597 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja4g1401 649 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 100 641 - -
Lja4g1401 649 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 184 374 IPR001079 GO:0030246
Lja4g1401 649 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 100 641 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja4g1401 649 SUPERFAMILY Concanavalin A-like lectins/glucanases 185 374 IPR013320 -
Lja4g1401 649 CDD GLECT 185 371 IPR001079 GO:0030246
Lja4g1401 649 Gene3D - 397 642 - -
Lja4g1401 649 SMART Gal_bind_lectin_2 188 373 IPR001079 GO:0030246
Lja4g1401 649 Gene3D - 182 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1401 Lja-Chr4 12579635 12593795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1401 11 649 Glycosyltransferase AT3G06440 51.708 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1401 K20843 - gmx:100816729 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1401 4 12579635 12593795 Lja4g1401 4 12579635 12593795 ECH
Lja4g1401 4 12579635 12593795 Lja2g1164 2 11056125 11061531 PCT