Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1164 ATGCAGGGATATTGCTTCATTCATAGGATCATCAAAATGAAGAAATTGTATGGAGGAGTGCTGATTGCCTCATTGTTTATGGTGTTTATGCTTATAAATCTGCGATATGGGGTCATGAAAAATCCTATTAGTGAAGGTTATCTGACTATACCTATACCTAATGGCACTGATCCTATAAAATGGATAAATCCTGTGGTTCCGCCTGCTATTCAAAATCCAGATGGTGCTTCCCAAGTTATATCTGCTGATATTTTAGTTTCTAGCCTCTTTGCTGGGAGCAACTTTTCCAAAGAAGAGCAACATGCTCTGCAGACATGGAACCATTTGAAACACTTGATTGATCATGCTCAGGGTTTACCTAGTGCAGCAGAAGCTATCAAGGAAGCTGCTGGTGCATGGAATAATCTGATCTCCTCAATTGAAGAGCAAAGACATGGTCATGTGAATGATAGTTCAAGAACAAAAGAGAAACAATGTCCCCATTTTCTTAACAAAATGAATTCCACTGAACTTGGTAATAGTAGTTACAAACTGCAAGTACCTTGTGGTCTTACACAGGGTTCTTCTATTACTGTAATTGGCATTCCAAATGGTCTTCTAGGTAATTTTCGAATTGACTTGACTGGAGAACCACTTCCTGGGGAGCCTGATCCCCCTGTTGTTTTGCACTATAATGTTAGGCTTCACGGTGATAAAGTCACTGAAGAACCAGTAATTGTCCAAAACACTTGGACAGTAGCTCATGATTGGGGTGAAGAGGAACGCTGCCCATCTCCTACTCCTGAGAAGGTTAAGAAAGTTGAGGAGTTGGAGCAGTGCAATAAGATAGTAGGGAAAAACATTAGCCAACTTTACATGTCTGGGATGTATTCCCACTCTTCAAAGCGATTTTCAGCAACAGAAGATCAATCTATAAATAGGAAATACTTTCCTTTTAAGCAAGGTTACCCATTTGTGGCAACTCTTAGAGTGGGGTCAGAGGGAATCCAGATGACAGTTGATGGAAAGCCTATAACTTCGTTTGCTTTCCGCGAAACTTTGGAGCCATGGCTTGTCAGTGAGATACGAATTTCAGGGGACCTCAAATTAATATCTATTCTTGCCAGTGGTCTGCCCACATCAGAGGACTCAGAGCATATTATTGATCTAGAATCCTTGAAAGCAAGTCCAATATCTTCGCAAACTACATTGGATCTCTTCATTGGTGTTTTCTCTACTGCTAACAATTTTAAGCGTCGGATGGCTGTCAGAAGAACCTGGATGCAGTACAATGCCGTACGATCAAATGCAACGGCTGTGCGCTTCTTTGTTGGTTTGCACAAAAGCCAAATAGTTAATGAAGAATTGTGGAAAGAAGCACAAACCTATGGGGACATACAGCTGATGCCATTTGTTGACTACTACGGCCTCATCACCTGGAAATCTTTAGCAATCTGCATTTTTGGGACACAAGTTGTTTCCGCAAAGTTTATCATGAAGACAGATGATGATGCATTTGTTCGTATAGATGAAGTGCTAGGCTCTTTGCATAGAATCAATGTGTCTCATGGGTTACTCTATGGACTCATCAATTCAGATTCCCAACCTCATCGAAATACTGATAGCAAATGGTACATCAGCCCAGAGGAATGGAGCGAAGGAACTTATCCTCCTTGGGCACATGGTCCCGGCTATGTGGTCTCAAATGACATAGCAAAGACGGTGTACAAGAAATACAGAGAGAACCATTTGAAGATGTTCAAATTAGAAGACGTTGCAATGGGAATCTGGATCGCAGACATGAAGAAGGAAGGTCTTGATGTTCGGTATGAGAATGAGGGAAGAGTCTATAATGCGGGTTGCAAGGACGGTTATGTGGTTGCCCATTACCAAGATCCTAGGGAGATGCTGTGTTTGTGGCAGAAACTTCAAGAAGGAAAAGGTGCAAAATGCTGTGGTGATAGAAGATGA 1950 0.4159 MQGYCFIHRIIKMKKLYGGVLIASLFMVFMLINLRYGVMKNPISEGYLTIPIPNGTDPIKWINPVVPPAIQNPDGASQVISADILVSSLFAGSNFSKEEQHALQTWNHLKHLIDHAQGLPSAAEAIKEAAGAWNNLISSIEEQRHGHVNDSSRTKEKQCPHFLNKMNSTELGNSSYKLQVPCGLTQGSSITVIGIPNGLLGNFRIDLTGEPLPGEPDPPVVLHYNVRLHGDKVTEEPVIVQNTWTVAHDWGEEERCPSPTPEKVKKVEELEQCNKIVGKNISQLYMSGMYSHSSKRFSATEDQSINRKYFPFKQGYPFVATLRVGSEGIQMTVDGKPITSFAFRETLEPWLVSEIRISGDLKLISILASGLPTSEDSEHIIDLESLKASPISSQTTLDLFIGVFSTANNFKRRMAVRRTWMQYNAVRSNATAVRFFVGLHKSQIVNEELWKEAQTYGDIQLMPFVDYYGLITWKSLAICIFGTQVVSAKFIMKTDDDAFVRIDEVLGSLHRINVSHGLLYGLINSDSQPHRNTDSKWYISPEEWSEGTYPPWAHGPGYVVSNDIAKTVYKKYRENHLKMFKLEDVAMGIWIADMKKEGLDVRYENEGRVYNAGCKDGYVVAHYQDPREMLCLWQKLQEGKGAKCCGDRR* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1164 649 Gene3D - 169 367 - -
Lja2g1164 649 Gene3D - 389 610 - -
Lja2g1164 649 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 76 638 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja2g1164 649 CDD GLECT 176 366 IPR001079 GO:0030246
Lja2g1164 649 Pfam Galactoside-binding lectin 176 367 IPR001079 GO:0030246
Lja2g1164 649 SMART Gal_bind_lectin_2 180 368 IPR001079 GO:0030246
Lja2g1164 649 PANTHER - 76 638 - -
Lja2g1164 649 SMART galectin_3 176 369 IPR001079 GO:0030246
Lja2g1164 649 SUPERFAMILY Concanavalin A-like lectins/glucanases 176 369 IPR013320 -
Lja2g1164 649 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 176 369 IPR001079 GO:0030246
Lja2g1164 649 Pfam Galactosyltransferase 411 595 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1164 Lja-Chr2 11056125 11061531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1164 13 645 Glycosyltransferase AT1G26810 61.994 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1164 K14413 - gmx:100782548 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1164 2 11056125 11061531 Lja2g1164 2 11056125 11061531 ECH
Lja4g1401 4 12579635 12593795 Lja2g1164 2 11056125 11061531 PCT