Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1395 ATGGTGTTGGCTTCCAGAAACCCAATCAGGAGTGAAAAAATTGTACCTGGTGATCTTCCCATAGTAGACCTCAAAGCTGAAAAATCTGAGGTGACAAGGCTCATTGTGAAAGCAAGTGAAGAATATGGTTTTTTCAAAGTGATCAACCATGGTATTAGCCATGAAACTATTGCCAAAATGGAAGAAGCAGGGTTTGGGTTCTTTGCCAAACCAATGCCTCAAAAGAAACAGGCTGCACCTGGTTATGGTTGTAAGAACATTGGCTTCAATGGAGACATGGGTGAGGTTGAGTACCTTCTGCTCAATGCTAACACTCCTTCCATTGCTCAGATATCCAAAAGTGTATCCATTGACCCATCAAACTTCAGGTCTACAGTGAGTGCATACACAGAAGCAGTGAGGGAGCTGGCATGTGAGATATTGGAGGTAATGGCAGAGGGCCTGGGGGTCCAGGACACATTGGTTTTCAGCAGGTTGATAAGGGATATTGAAAGTGACTCAGTCTTGAGGCTCAATCACTACCCACCTATACTTAACAGCAACAACAGGGAGGACAAGTCACCCTCCTACAACAACAAGGTTGGGTTTGGGGAGCATTCTGACCCTCAGATCTTGACCATTCTCAGATCCAATGACGTATCTGGCCTCCAAATCTCTCTTCAAGATGGGGTGTGGATCCCAGTCAAGCCTGACCCTGAGGCTTTCTGTGTTAACGTAGGTGATGTACTAGAGGTTATGACAAATGGAAGATTTGTGAGCGTGAGACACAGGGCTATGACCAACTCATTCAAATCAAGAATGTCAATGGCATATTTTGGGGCTCCACCACTGCATGCTTGTATTGTTGCTCCTCCAGTTTTGGTTACACCCGAGAGGCCCTCCCTCTTCCGACCATTCACCTGGGCCGACTACAAGAAAGCCACATACTCTCTCAGGCTTGGAGACAGCCGCATGGAACTTTTCAGAAACAATAATGATATGTAG 984 0.4593 MVLASRNPIRSEKIVPGDLPIVDLKAEKSEVTRLIVKASEEYGFFKVINHGISHETIAKMEEAGFGFFAKPMPQKKQAAPGYGCKNIGFNGDMGEVEYLLLNANTPSIAQISKSVSIDPSNFRSTVSAYTEAVRELACEILEVMAEGLGVQDTLVFSRLIRDIESDSVLRLNHYPPILNSNNREDKSPSYNNKVGFGEHSDPQILTILRSNDVSGLQISLQDGVWIPVKPDPEAFCVNVGDVLEVMTNGRFVSVRHRAMTNSFKSRMSMAYFGAPPLHACIVAPPVLVTPERPSLFRPFTWADYKKATYSLRLGDSRMELFRNNNDM* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1395 327 Coils Coil 21 41 - -
Lja4g1395 327 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 323 - -
Lja4g1395 327 PANTHER PLANT GIBBERELLIN 2-OXIDASE 3 323 - -
Lja4g1395 327 SUPERFAMILY Clavaminate synthase-like 17 315 - -
Lja4g1395 327 Pfam 2OG-Fe(II) oxygenase superfamily 166 273 IPR044861 -
Lja4g1395 327 PRINTS Isopenicillin N synthase signature 35 52 - -
Lja4g1395 327 PRINTS Isopenicillin N synthase signature 199 220 - -
Lja4g1395 327 PRINTS Isopenicillin N synthase signature 235 261 - -
Lja4g1395 327 Gene3D - 4 312 IPR027443 -
Lja4g1395 327 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 164 275 IPR005123 -
Lja4g1395 327 Pfam non-haem dioxygenase in morphine synthesis N-terminal 19 79 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1395 Lja-Chr4 12476276 12481891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1395 8 322 Glycosyltransferase AT5G59530 25.816 3.32e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1395 K04125 - gmx:100783917 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1395 4 12476276 12481891 Lja4g1395 4 12476276 12481891 ECH
Lja4g1395 4 12476276 12481891 Lja6g2755 6 56648332 56656450 PCT