Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1339 ATGTTCCTGTTTGACTGGTTTTACGGAATTCTGGCGACCCTTGGTTTGTGGCAGAAGGAGGCGAAGATTTTGTTCCTTGGGTTAGATAATGCGGGGAAAACCACCTTGCTTCACATGCTCAAGGATGAGAGATTGGTTCAGCATCAACCTACCCAGTATCCAACTTCGGAAGAGTTGAGTATTGGGAAGATAAAGTTCAAGGCTTTTGATCTGGGTGGTCACCAGATTGCTCGTAGGGTCTGGAAGGACTATTATGCTCAGGTGGATGCTGTAATCTACCTGGTTGACGCATATGACAAGGAAAGATTTGCAGAATCAAAGAAGGAGCTGGATGCTCTTCTTTCTGATGATTCACTAGCAGATGTACCTTTCCTTATCTTGGGGAACAAAATTGACATACCTTATGCTGCCTCAGAAGACGAGCTACGTTATCATTTGGGTCTGACTGGACTCACTACAGGCAAAGGGAAAGTTAATATGGCTGACTCCAAGGTCCGTCCTTTGGAGGTGTTCATGTGCAGCATTGTGCGCAAAATGGGATATGGTGAAGGCTTTCAGTGGCTCTCTCAGTATATTAAGTAG 582 0.4519 MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVIYLVDAYDKERFAESKKELDALLSDDSLADVPFLILGNKIDIPYAASEDELRYHLGLTGLTTGKGKVNMADSKVRPLEVFMCSIVRKMGYGEGFQWLSQYIK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1339 193 Gene3D - 1 193 IPR027417 -
Lja4g1339 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lja4g1339 193 CDD Sar1 2 192 - -
Lja4g1339 193 SMART arf_sub_2 3 193 - -
Lja4g1339 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Lja4g1339 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lja4g1339 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lja4g1339 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lja4g1339 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lja4g1339 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lja4g1339 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lja4g1339 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Lja4g1339 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Lja4g1339 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Lja4g1339 193 PANTHER GTP-BINDING PROTEIN SAR1A-LIKE PROTEIN 1 193 - -
Lja4g1339 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1339 Lja-Chr4 12029416 12031466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1339 K07953 - csin:114277695 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1339 4 12029416 12031466 Lja4g1339 4 12029416 12031466 ECH
Lja4g1339 4 12029416 12031466 Lja1g0542 1 4951605 4953626 ECH
Lja4g1339 4 12029416 12031466 Lja5g1388 5 13912809 13914697 ECH
Lja4g1339 4 12029416 12031466 Lja6g2302 6 51968619 51971208 PCT