Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0542 ATGTTTTTGGTGGATTGGTTTTATGGGGTTTTAGCATCGCTCGGGCTATGGCAGAAGGAAGCCAAGATCTTATTCTTAGGACTCGATAACGCTGGCAAAACCACCTTGCTTCATATGCTCAAAGATGAGAGACTAGTCCAGCATCAGCCAACACAGTATCCCACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTCAAGGCCTTTGATCTTGGGGGTCATCAAATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTCTACTTAGTTGATGCTTACGACAAAGAAAGATTTGCCGAGTCGAAAAAGGAGCTGGATGCTCTGCTCTCTGATGAATCCTTGGCCAGTGTCCCCTTCCTTGTCCTTGGAAACAAAATAGATATTCCATATGCTGCCTCAGAAGAAGAGCTGCGTTACCATTTGGGCCTGGCCAACTTCACCACAGGCAAGGGTAAGGTGAATTTGTCAGACACGAGTGTCCGTCCCATGGAAGTGTTCATGTGCAGTATTGTGAAGAAAATGGGTTACGGGGAAGGTTTCAAATGGGTTTCTCAGTACATCAAATAA 582 0.4553 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLVLGNKIDIPYAASEEELRYHLGLANFTTGKGKVNLSDTSVRPMEVFMCSIVKKMGYGEGFKWVSQYIK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0542 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Lja1g0542 193 PANTHER PROTEIN SAR1A, PUTATIVE, EXPRESSED-RELATED 1 193 - -
Lja1g0542 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lja1g0542 193 CDD Sar1 2 192 - -
Lja1g0542 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lja1g0542 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lja1g0542 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lja1g0542 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lja1g0542 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lja1g0542 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lja1g0542 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Lja1g0542 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Lja1g0542 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 137 IPR005225 GO:0005525
Lja1g0542 193 SMART arf_sub_2 4 193 - -
Lja1g0542 193 Gene3D - 1 193 IPR027417 -
Lja1g0542 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0542 Lja-Chr1 4951605 4953626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0542 K07953 - csv:101221276 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0542 1 4951605 4953626 Lja5g1388 5 13912809 13914697 ECH
Lja4g1339 4 12029416 12031466 Lja1g0542 1 4951605 4953626 ECH
Lja6g2302 6 51968619 51971208 Lja1g0542 1 4951605 4953626 ECH
Lja1g0542 1 4951605 4953626 Lja1g0542 1 4951605 4953626 ECH