Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1294 ATGGGCAACCTGCTGGTGAAAAATTCTGCATCGGGTAGCCTTAGATTCTGGAGAAAGCGCAAGGATAACAACAAGCATGTAGTTTCAGAAGATTCAAGTTTAGAAGAGGAAGTTCCATGGGAACCTTTTGTTCCTCTTACAGACGAGGAAAGAGCTGAGATTTTACTTGCCTTTTCTGCTGACAGGGAAAAGGTATTGGTTACTCATGATAAAACTAGCATTGAGATCACGGCCGGAAAGTTTCAGTGCCTAATAGAAGGGGCATGGTTAAATGATGAGGTGATAAATTTGTACCTTGAGTTGCTGAAAGAGAGGGAGAGAAGAGAGCCATGGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAAGTTAACAATTGGCGAGAATGGTTATGATTTCAAATCTGTGAAGAGATGGACCAGCCGAAAGAAGTTGGGATATGGCTTACATGAATGTGATAAAATATTTGTACCTATTCATAAAGGTGCCCATTGGCGTCTTGCTGTCATCAATAATAAAGATAAGAAATTTCAGTATCTTGACTCAATGAAAGTAAATGATACCCATGTTCTGGAGGTTCTGGCTAGATATTATGCAGATGAAGTAAAGGACAAGACTGGAGAAGATATGGACGTAAGCTCTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGAACAGAAGAATATGTCTGATTGTGGGGTGTTTATGATCAAATATGCTGACTTTTATGGCAGAAACCTGGGACTGTGTTTCAAGCAGGAGCATATGCCTTACTTCCGGCTTCGAACAGCTAAGGAAATCTTGAGATTGAAAGCTGACTAA 831 0.3983 MGNLLVKNSASGSLRFWRKRKDNNKHVVSEDSSLEEEVPWEPFVPLTDEERAEILLAFSADREKVLVTHDKTSIEITAGKFQCLIEGAWLNDEVINLYLELLKERERREPWKFLNCHFFSTFFYKKLTIGENGYDFKSVKRWTSRKKLGYGLHECDKIFVPIHKGAHWRLAVINNKDKKFQYLDSMKVNDTHVLEVLARYYADEVKDKTGEDMDVSSWEKEFVEDLPEQKNMSDCGVFMIKYADFYGRNLGLCFKQEHMPYFRLRTAKEILRLKAD* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1294 276 Pfam Ulp1 protease family, C-terminal catalytic domain 89 270 IPR003653 GO:0006508|GO:0008234
Lja4g1294 276 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 32 275 - -
Lja4g1294 276 ProSiteProfiles Ubiquitin-like protease family profile. 74 246 IPR003653 GO:0006508|GO:0008234
Lja4g1294 276 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 32 275 - -
Lja4g1294 276 Gene3D Adenoviral Proteinase; Chain A 43 274 - -
Lja4g1294 276 SUPERFAMILY Cysteine proteinases 42 274 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1294 Lja-Chr4 11600285 11605180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1294 K08592 - gmx:100797013 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1294 4 11600285 11605180 Lja4g1294 4 11600285 11605180 ECH
Lja4g1294 4 11600285 11605180 Lja6g2229 6 51229508 51237088 PCT