Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1277 ATGATTTCTTATTTCAAAAAAGAAAAAGAAATAATGGTCGAAAAGACTACCTCCCGACACCCGCAAATAGCTCGATTATTGGCTTTGCACGGGCCGACTCCACTTCCCATGCCGCGGGGAATATATCTACGGACATGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGTAGAAGGAAAGTAAAGAAAGTTCTACAGAGCATTGATGGAGTTTTCACTACAACAATCGACCCTCAACAGCAGAAAGTAACTGTCACAGGAAGTGTTGGTGTTGAGATTCTGATAAGGAAACTGGTCAAAGCTGGAAAACATGCCGAGGTTTGGCCGGAGAATCTCTCCGGTAAGGGAAATGCAAATGCCTCCAACAAGGCGAAGAAGAAGAGTGAACAGAGAAACCCTGAAACTGTGGAAAACCATTCTGGTGCAAATGTGGAATCTAAGCCCAGTTCTGGCAAAAACAGGGGAGTTGAAAGTGCTGTAAAGTGCAGAAACAAGGGAATTGACAGTGCTGAAAAGAGCAAAAACAGGGGAATTGAAAGCAAGAGTAGCAACTCAAAATCCGGCACCACCGCGCAGGGAAAGTCACCGGCGCCGGAACAGGACAGGAAAGATGGTCAAAGTGAAGGAGGGACCGGAAAAAGTGGTGGTCCTGGTGGAGGGGGTTCTGGTAAGAAGAAAAAGAAAGCTCAGAGTGGTGGGGGTGGTGGTGGAAGCAACAATGGGTTGAGTGCACCATCCACCACCCCTGCCCCTGTTCCTGCACCTGCACACACTGGATTCCAGTTCCAGAATGATCCTGGCCAGGTTGTGGGCCATTTGAATCTGAGCCCTACACGTCATCAATATCCAGAAACTTGTTATTACCCTCCCATGGTCTATTTTGCAAGTTACAACAACAGGCTATGTCCCATGGGAACAATGGGTGGTCCTTCTTATTATGTTCCCCCATACCCCTACATAGGTGCAGGCATGGATCATCATCATGATCTTTATCAGATGCAATCACCATCGTTGGTTCCCTTCGAGATCTTCAGTGATGAAAATGCTAATGGCTGTTCTGTTATGTGA 1068 0.4672 MISYFKKEKEIMVEKTTSRHPQIARLLALHGPTPLPMPRGIYLRTWFLKVSIHCEGCRRKVKKVLQSIDGVFTTTIDPQQQKVTVTGSVGVEILIRKLVKAGKHAEVWPENLSGKGNANASNKAKKKSEQRNPETVENHSGANVESKPSSGKNRGVESAVKCRNKGIDSAEKSKNRGIESKSSNSKSGTTAQGKSPAPEQDRKDGQSEGGTGKSGGPGGGGSGKKKKKAQSGGGGGGSNNGLSAPSTTPAPVPAPAHTGFQFQNDPGQVVGHLNLSPTRHQYPETCYYPPMVYFASYNNRLCPMGTMGGPSYYVPPYPYIGAGMDHHHDLYQMQSPSLVPFEIFSDENANGCSVM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1277 355 CDD HMA 48 106 IPR006121 GO:0046872
Lja4g1277 355 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 43 355 - -
Lja4g1277 355 MobiDBLite consensus disorder prediction 109 262 - -
Lja4g1277 355 ProSiteProfiles Heavy-metal-associated domain profile. 51 107 IPR006121 GO:0046872
Lja4g1277 355 MobiDBLite consensus disorder prediction 180 196 - -
Lja4g1277 355 MobiDBLite consensus disorder prediction 158 179 - -
Lja4g1277 355 Pfam Heavy-metal-associated domain 50 103 IPR006121 GO:0046872
Lja4g1277 355 MobiDBLite consensus disorder prediction 135 153 - -
Lja4g1277 355 SUPERFAMILY HMA, heavy metal-associated domain 42 109 IPR036163 GO:0046872
Lja4g1277 355 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 43 355 - -
Lja4g1277 355 Gene3D - 44 107 - -
Lja4g1277 355 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1277 Lja-Chr4 11392100 11394731 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1277 - - lja:Lj0g3v0144089.1 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1277 4 11392100 11394731 Lja6g2220 6 51147345 51148510 PCT