Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0637 ATGAACACCGGTGGAAGACTCATTGCTGGTTCTCATAACCGGAACGAGTTTGTGCTCATCAATGCCGATGAGAATGGACGGATTAAGTCTGTCAAAGAACTGAGTGGACAGATATGTCAGATTTGTGGGGATGAGATAGAGATTTCTGGGGATGGTGAGCCTTTTGTTGCCTGCAATGAGTGTGCTTTCCCTGTGTGTCGGCCTTGCTACGAATACGAGAGACGGGAAGGGAATCAGGCCTGCCCCCAGTGCAAGACCAGATACAAGCGTATCAAAGGTACTCCTAGGGTTGAAGGTGATGAAGATGAGGATGATATTGATGACTTGGACAATGAGTTTGAGTATGACCCTGATGGTTTGGGCCAACAATCAGTTTCTGATTCATTGTATGGACGCCTTAACACTGGGCGTGGTTCTAATTCTAATATATCTGGCATCCCCGCGAATTCGGAACATGGTTCCCCTCCTCTCAATTCTGAAATCCCACTCCTGACTTATGGGGAGGAGGATCCTGAGATATCTTCTGATAGACATGCTCTGATTGTTCCGCCATATGCGAATCATGGGAACAGAGTCCATCCCATGCCTTACACTGATCCATCTACTCCACTGCAACCCAGACCAATGGTTCCCAAGAAAGACATTGCTGTATATGGGTATGGAAGTGTGGCTTGGAAAGACCGGATGGAGGACTGGAAGAAAAGGCAATCTGACAAACTTCAAGTGGTGAAGCATGAAGGGAGCAATGATTCAAATTATGGTGATGAGTTTGAGGACCCCGATTTGCCCATGATGGACGAGGGCAGGCAGCCACTTTCTCGGAAGCTACCTATCCCTTCAAGCAAGATAAATCCATACAGAATGATTGTTATACTCCGTCTTGTAGTCCTTGCGCTTTTTTTCCACTATAGAATTCTCCACCCAGTTAATGATGCATATGGATTGTGGTTGACATCAGTCATCTGTGAAATATGGTTTGGTGTATCTTGGATAATGGATCAGTTTCCAAAATGGTACCCGATAAAGCGAGAAACATACCTAGATCGTCTATCGCTAAGGTATGAGAAAGAAGGGAAACCATCTGAGTTGTCCAATGTAGACATCTTTGTCAGTACAGTTGATCCCTTGAAAGAACCTCCACTGATTACAGCAAACACTGTTCTATCTATCCTTGCTGTTGATTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCTGCTATGCTTACTTTTGAAGCACTTTCTGAGACATCTGAATTTGCTAGGAGATGGGTCCCATTTTGTAAGAAATACAATATTGAGCCCCGAGCCCCAGAATGGTATTTCGGTCTGAAGATTGACTATCTGAGAAATAAAGTACATCCAGCATTTGTTAGGGAAAGAAGAGCAATGAAGAGGGATTATGAAGAATTTAAAGTGAAGATTAACAGTTTGGTTGCAACAGCAACAAAGGTTCCTGAGGATGGTTGGACCATGCAGGATGGGACTCCATGGCCTGGAAATAATGTGCGGGATCATCCTGGAATGATTCAGGTCTTCCTTGGTCATGATGGTGTTCGAGATGTTGAAGGAAATGAATTGCCACGCTTGGTCTATTGCTCTCGAGAAAAGAGGCCAGGTTTTGATCACCACAAAAAGGCCGGGGCTATGAATGCTTTGATGCGGGCATCAGCAATTATCTCGAATGCACCTTATCTTCTGAATGTTGATTGTGATCACTACATCAACAATAGCAAGGCACTTAGAGAAGCCATGTGTTTTATGATGGACCCTCAACTTGGGAAAAAGATTTGCTATGTACAATTTCCCCAGAGATTTGATGGAATTGATCGGCATGATAGATACTCAAACAGAAATGTTGTATTTTTTGATATCAACATGAAAGGATTGGATGGAATACAAGGTCCAATTTATGTTGGAACTGGATGTGTTTTCAGAAGGTATGCGCTCTATGGATATGATGCACCTGCCAAGAAGAAGGCACCGAGCAAAACCTGTAACTGTTGGCCAAAATGGTGCTGCTTGTGCTTTCCATGTTGTGCCTCCAGAAAGAAGAAGAATGCCAACAACACTAAGGATAGAAAGAAGAAGGTGAAGCACAGCGAAGCATCAAAGCAGATACACGCACTTGAAAATATTGAGGCAGGGAATGAAGGATCCAACAATGAGAAGACTTCCAACTTGACTCAAATGAAATTGGAGAAGAGGTTTGGACAGTCTCCAGTGTTTGTAGCCTCCACACTTTTGGAACACGGTGGTGTTCCAAAGGGCGTGAGTCCTGCATCACTTTTAAAAGAAGCCATCCAAGTCATCAGTTGTGGTTATGAAGACAAAACTGAATGGGGGAAAGAAGTGGGGTGGATATATGGTTCTGTGACAGAAGATATCTTGACTGGATTTAAAATGCATTGCCATGGTTGGCGGTCCGTGTATTGCATCCCTAAACTCCCAGCATTCAAAGGGTCTGCACCTATCAACCTTTCAGATCGTCTGCACCAAGTTCTTCGGTGGGCCCTTGGGTCTGTCGAGATCTTTTTCAGCAGACATTGTCCAATCTGGTATGGCTACGGTGGTGGGTTGAAGTGGTTGGAACGATTTTCCTACATAAATTCTGTCGTGTATCCCTGGACATCACTCCCATTGCTTGTCTACTGTACACTACCAGCCATATGCCTTCTGACTGGAAAGTTTATTGTTCCCGAGATTAGCAACTATGCCAGTCTTGTTTTCATCGCCCTCTTCATATCCATTGCTGCGACCGGTATCCTCGAGATGCAGTGGGGTGGTGTTGGTATAGATGATTGGTGGAGGAATGAGCAGTTTTGGGTGATTGGAGGTGTTTCTTCACATCTCTTTGCCCTTTTCCAGGGTCTACTGAAGGTTTTAGCTGGTGTCAACACAAACTTCACTGTCACATCAAAAGCAGCTGATGATGGAGAGTTCTCAGAGCTCTATATCTTCAAGTGGACAGCACTACTCATCCCTCCAACTACTTTGTTAATCATAAACATAGTTGGGATCATTGTTGGGATCTCAGATGCCATCAACAATGGTTATGACTCATGGGGACCTCTCTTTGGTAGATTGTTCTTCGCCTTGTGGGTCGTCCTCCATCTCTATCCATTCCTGAAAGGTTTACTTGGTAAACAGGATAGAATGCCCACCATTGTGTTGGTGTGGTCAATTCTGCTTGCATCCATCTTGACCCTCATGTGGGTTAGAATCAACCCTTTTGTGTCAAGAGATGGCCCTGTGTTAGAAATTTGTGGATTGAATTGTGATGAGTCATAG 3300 0.4418 MNTGGRLIAGSHNRNEFVLINADENGRIKSVKELSGQICQICGDEIEISGDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGTPRVEGDEDEDDIDDLDNEFEYDPDGLGQQSVSDSLYGRLNTGRGSNSNISGIPANSEHGSPPLNSEIPLLTYGEEDPEISSDRHALIVPPYANHGNRVHPMPYTDPSTPLQPRPMVPKKDIAVYGYGSVAWKDRMEDWKKRQSDKLQVVKHEGSNDSNYGDEFEDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIVILRLVVLALFFHYRILHPVNDAYGLWLTSVICEIWFGVSWIMDQFPKWYPIKRETYLDRLSLRYEKEGKPSELSNVDIFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARRWVPFCKKYNIEPRAPEWYFGLKIDYLRNKVHPAFVRERRAMKRDYEEFKVKINSLVATATKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHDGVRDVEGNELPRLVYCSREKRPGFDHHKKAGAMNALMRASAIISNAPYLLNVDCDHYINNSKALREAMCFMMDPQLGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRYALYGYDAPAKKKAPSKTCNCWPKWCCLCFPCCASRKKKNANNTKDRKKKVKHSEASKQIHALENIEAGNEGSNNEKTSNLTQMKLEKRFGQSPVFVASTLLEHGGVPKGVSPASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKLPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSLPLLVYCTLPAICLLTGKFIVPEISNYASLVFIALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYIFKWTALLIPPTTLLIINIVGIIVGISDAINNGYDSWGPLFGRLFFALWVVLHLYPFLKGLLGKQDRMPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNCDES* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0637 1099 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 508 660 IPR029044 -
Lja4g0637 1099 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1096 - -
Lja4g0637 1099 Pfam Cellulose synthase 366 1085 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja4g0637 1099 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lja4g0637 1099 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Lja4g0637 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Lja4g0637 1099 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Lja4g0637 1099 MobiDBLite consensus disorder prediction 136 160 - -
Lja4g0637 1099 MobiDBLite consensus disorder prediction 240 262 - -
Lja4g0637 1099 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1096 - -
Lja4g0637 1099 MobiDBLite consensus disorder prediction 136 156 - -
Lja4g0637 1099 SUPERFAMILY Nucleotide-diphospho-sugar transferases 380 915 IPR029044 -
Lja4g0637 1099 SUPERFAMILY RING/U-box 24 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0637 Lja-Chr4 5275010 5282324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0637 1 1096 Glycosyltransferase AT5G64740 81.984 0.0 1853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0637 K10999 - gmx:100794515 2114.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0637 4 5275010 5282324 Lja4g0637 4 5275010 5282324 ECH
Lja1g4553 1 59481824 59489735 Lja4g0637 4 5275010 5282324 ECH