Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4553 ATGAACACCGGTGGTCGACTCATTGCTGGTTCGCACAACAGGAACGAGTTCGTGCTCATCAATGCCGACGAAAATGCAAGGATTAAGTCTGTCCAAGAATTGAGCGGACAAATATGTCACATTTGTGGGGACGAGATAGAGATTGCAGAGGATGGGGAGCCCTTTGTTGCTTGCAATGAGTGTGCTTTTCCTGTTTGTCAACAGTGCTATAAATATGAGAGACTAGAGGGGAATCAAGCATGTCCTCAGTGCAAGACCAGATACAAACGCATCAAAGGATGTCCCAGGGTTGAAGGCGATGAGGATGAGGATGATACTGATGACCTAGACAATGAGTTTAGCTATGCACATGCTGATGCTTTGGGTTTGCAACCAACTACAGATTCAATGCTTTCTGATCTCAATTCTAATATATCTGGCATCCCCCCAAATTTGGAGCATGACACATCTGATCTCAATTCAGAAATTCCACTCTTGACTTATGGGGAAGAGGATCCTGAAATATCTTCTTATCGACATGCTCTAATTGTTCCTCCATACATGAATAGTGGAAACAGAGTTCATTCCGTACCTTCTAGTGTTCAGTCTCTTCCAGTGCAACAAAGGTCAATGGTTCCAATGAAAGATATTGCTGTGTATGGGTATGGAAGTGTGGCTTGGAAAGATCGGATGGAAGAATGGAAGAAAAGGCAGAAGGACAAACTTCAGATGGTGAACCATGAAGGGAAAAAATATGGTGGGAATTTTGGTGATGAGTTGGACGACCCTGATTTACCGTTGATGGATGAAGGCAGGCAGCCACTTTCACGAAAGCTACCTATCCCTTCCAGCAAGATAAATCCATACAGAATGATTATAATTCTCCGCCTTGTAGTCCTTGGGCTTTTCTTTCATTATAGAATTCTTCACCCAGTTAATGATGCATTTGGCTTGTGGTTGACATCGGTCATCTGTGAAATATGGTTTGGTGTATCATGGATAATGGATCAATTTCCAAAATGGTGCCCTATTGTGCGAGAAACATACCTTGATCGTCTGTCACTGAGGTATGAAAAAGAAGGGAAGCCATCTGAGTTGTCCTGTGTGGACATCTTTGTCAGTACAGTTGATCCCATGAAAGAACCACCACTGATAACTGCAAATACTGTTCTATCTATCCTTGCAGTTGACTATCCAATTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCTGCCATGCTTACTTTTGAGGCACTTTCTGAGACATCTGAATTTGCCAGAAGATGGGTGCCATTTTGTAAAAAATACAATATTGAGCCCCGAGCTCCAGAATGGTATTTCAATCAGAAGATTGATTATCTGAAAAATAAAGTTCATCCAGCTTTTGTCAGGGAAAGGAGAGCAATGAAGAGAGATTATGAAGAATTTAAGGTTAGGATAAACAGTTTGGTGGCAACTGCACAGAAGGTTCCTGAGGATGGGTGGACAATGCAGGATGGGACTCCGTGGCCTGGAAATAATGTGAGGGACCATCCTGGCATGATTCAGGTATTTCTTGGTCAGGATGGTGTTCGTGATATTGAAGGACATGAGTTGCCTCGCCTAGTTTATGTTTCTAGAGAAAAGCGGCCAGGCTTTGATCATCACAAAAAGGCTGGGGCAATGAATTCTCTGGTACGAGTGTCTGCAGTCATCTCAAACGCGCCTTATGTTCTGAATGTTGATTGTGATCACTACATAAACAATAGCAAGGCACTTAGAGAAGCCATGTGTTTCATGATGGACCCTCAAGGTGGAAAAAATATTTGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGACCGGCATGATAGATATTCAAACAGGAATGTTGTATTTTTTGATATCAACATGAAAGGACTGGATGGACTACAAGGACCAATTTATGTTGGAACAGGATGTGTTTTCAGAAGGCAAGCGCTTTATGGACGTGATGCACCTGCCAAGAAGAAGCCCCCAAGTAAAACCTGTAATTGTTGGCCGAAATGGTGCTGCCTATGCTGTGGCTCTCGTAAGAAAAAGAATGCGAATACCAAGAAGGAGAAAAAGAAGTTGAAGCCCAGGGAATCATCAAGGCAGATACATGCACTTGAAAATATTGAGGAGGGGTTGCAAGGATCTAATGCGGAGAAGTCATCCTATTTGACTCAAATAAAGTTGGAGAAGAGGTTTGGGCAGTCTCCAGTGTTTGTTGCCTCCACTAATTTAGAAGATGGTGGAATTCCACCTGATGCGAGTCCTGCATCACTCTTAAAAGAAGCGATCCAAGTCATCAGCTGTGGTTATGAAGATAAAACGGAGTGGGGCAAAGAAGTTGGGTGGATTTATGGTTCTGTGACAGAAGATATCTTGACTGGATTTAAAATGCATTGCCATGGTTGGCGGTCTGTGTATTGCATCCCTAAGCGGCCTGCATTCAAGGGGTCAGCACCTATCAATCTTTCAGATCGTCTGCACCAGGTTCTTCGGTGGGCCCTTGGATCCGTTGAGATTTTTTTGAGCAAGCATTGTCCGATCTGGTATGGCTATGGTGGCGGGTTGAAGTGGTTGGAACGGTTTTCATACATAAACTCTGTTATATATCCTTGGACTTCCATCCCATTGCTTGTTTACTGTACTCTACCAGCTATATGTCTTCTGACAGGAAAATTTATTGTACCTGAGATCAGCAACTATGCAAGTCTTGTTTTCATTGCCCTCTTCATATCTATTGCAGCAACTGGTATCCTTGAGATGCAATGGGGTGGTGTCGGTATAGATGATTGGTGGAGGAATGAACAGTTTTGGGTGATTGGAGGTGTTTCTTCACACCTTTTTGCCCTCTTTCAAGGTCTGCTGAAGGTGTTGGCTGGTGTTGACACAAATTTCACTGTGACCTCTAAAGCAGCAGATGATGGAGCATTCTCGGAGCTCTATATCTTCAAGTGGACATCACTATTAATTGCTCCAACTACTTTATTAATAATAAATATTGTTGGGGTTGTGGTTGGGATCTCGGATGCCATCAACAATGGTTATGACTCATGGGGCCCTCTCTTTGGAAGATTGTTCTTTGCTTTGTGGGTCATCATTCATCTTTATCCGTTCCTCAAGGGGTTGCTTGGCAAACAAGATAGAATGCCCACTATCGTTTTGGTTTGGTCAATCCTATTAGCATCCATATTGACTCTCATGTGGGTTAGAATCAACCCATTTGTCTCAAGAGATGGCCCTGTGTTAGAAATTTGTGGATTGAATTGTGATGAGTCATGA 3276 0.428 MNTGGRLIAGSHNRNEFVLINADENARIKSVQELSGQICHICGDEIEIAEDGEPFVACNECAFPVCQQCYKYERLEGNQACPQCKTRYKRIKGCPRVEGDEDEDDTDDLDNEFSYAHADALGLQPTTDSMLSDLNSNISGIPPNLEHDTSDLNSEIPLLTYGEEDPEISSYRHALIVPPYMNSGNRVHSVPSSVQSLPVQQRSMVPMKDIAVYGYGSVAWKDRMEEWKKRQKDKLQMVNHEGKKYGGNFGDELDDPDLPLMDEGRQPLSRKLPIPSSKINPYRMIIILRLVVLGLFFHYRILHPVNDAFGLWLTSVICEIWFGVSWIMDQFPKWCPIVRETYLDRLSLRYEKEGKPSELSCVDIFVSTVDPMKEPPLITANTVLSILAVDYPIDKVACYVSDDGAAMLTFEALSETSEFARRWVPFCKKYNIEPRAPEWYFNQKIDYLKNKVHPAFVRERRAMKRDYEEFKVRINSLVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQDGVRDIEGHELPRLVYVSREKRPGFDHHKKAGAMNSLVRVSAVISNAPYVLNVDCDHYINNSKALREAMCFMMDPQGGKNICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGRDAPAKKKPPSKTCNCWPKWCCLCCGSRKKKNANTKKEKKKLKPRESSRQIHALENIEEGLQGSNAEKSSYLTQIKLEKRFGQSPVFVASTNLEDGGIPPDASPASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSKHCPIWYGYGGGLKWLERFSYINSVIYPWTSIPLLVYCTLPAICLLTGKFIVPEISNYASLVFIALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVDTNFTVTSKAADDGAFSELYIFKWTSLLIAPTTLLIINIVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNCDES* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4553 1091 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Lja1g4553 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Lja1g4553 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 908 IPR029044 -
Lja1g4553 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 504 656 IPR029044 -
Lja1g4553 1091 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Lja1g4553 1091 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1088 - -
Lja1g4553 1091 Pfam Cellulose synthase 362 1077 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja1g4553 1091 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lja1g4553 1091 SUPERFAMILY RING/U-box 24 107 - -
Lja1g4553 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4553 Lja-Chr1 59481824 59489735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4553 1 1088 Glycosyltransferase AT5G64740 81.319 0.0 1819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4553 K10999 - gmx:100794515 1960.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4553 1 59481824 59489735 Lja1g4553 1 59481824 59489735 ECH
Lja1g4553 1 59481824 59489735 Lja4g0637 4 5275010 5282324 ECH