Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0602 ATGGTGAGGTTTCTAGGGTTGAGTATTGGTTATGCTGATGAGCCGCGGGAAATCGTGTCAAGGTCAAACCTGACCAGTGAGTCCAGTGAAAATGGTTGGCTCATCAGGTTCTTTGACTCGGCGTTTTTCTGTGAGTGGATTGCTGTTAGCTACTTGTATAAGCATGATCATGCAGGGGTGCGTGATTATCTCTGTAATAGAATGTACACTCTTCCGTTGCAAGGGCTTGAGAGTTATTTGTTCCAGATATGTTACATGATGATACACAGGCCTAGTCCGTCGTTGGATAAATTTGTGATAGATATATGCGCAAAGTCGCTGAAGATTGCTTTGAAGGTGCATTGGTTCTTGATGGCGGAGCTTGAGGACTCTGATGATAATGAAGGGATTAGTAGGATTCAGGAGAAGTGTCAGACCGCCGCCACTTTGATGGGTGAGTGGCCGCCTCTGATACGGCCACAAACTGAACCTCCAAGCCCTGGAGGCAAGAGCCAAGTTTTAAACAGGTTGCTCTCGTCGAAAAATCGTTTGTTGTCACTAACATCCTCACCGCCTAGTCTGTCTTTATCATTTTCACCTTCCTCAGGTAACAATTTGCAAGGGGACGGCAACCCGCTGTCTCCTGATGAGAACAAGTTGTTTAAGAGGTTTATGCCGAGTCCAAAGGTTAGAGATGCTTTTCTTTTTAGGAAGTCAATGGACAAAGATAACGATGATAAGGATGGCTTTTTTAAGAGGCTTTTGAGAGATAGCAAAGGTGACGAAGAGCTGGGGCAAAAAATTCGTGATGCATTTCACTTTCGGAAATCATCTGAGAAAGATGACGGGGACCCTGAAAAAGACAATTTCTTGAAAAGGTTATTAAGAGACAGTAAGGACAGTAGAGGTGACGAGGAAGACTCTGAAAAGGATGGCTTCTTCCGGAGACTCTTAAGGGACAATAAAGGTGAAGATGAGGATGTGACCTCAAGTTCTGAGGGATTTTTTAAGAAGTTGTTTCGTGATAGCAAGAATGAAGATAGATCATACACTAAAACAATGGAAGATGAAGAGAAGGAGGGGTTCTTTAAAAGGTTGTTTCGTGATAGCAAGAATGACTCTGAAGACAGGACAGATACTAAAACAATGGAAGATGAAGAAAAAGAGGGACTTTTCCGAAAGCTTTTCCGGGAGAAATTGGAAGATAGGAAGGATGGGAGTGATAGGAATGATAGCAGAGATGTTGCTAATTCTGAAGAAAAATGTGCAAAAGCTGCTGAAGAGGATGAAAAGGAAGGATTTTTCCGGAAATTATTTAAGGATAAATTTGAGGACAAGAAAAATACAAATGATAAAATTGAAGAGGGTACTGCCAGTATTGAGGAAGAAGAGCCTTCTGAGTTTTCCTTGTTCAAAAGACTATTTCGTGTGCACCCTGAAGATGCTAAAAGTAGCCTGGTCAATGAAAACAGTAATAATAGTGGCTTATTTGAAAGTAGTCCAGGTACAGAGAATTTTTTTCGTAAATTGTTCAAGGACCGTGATCGTTCAATTGAAGATTCAGAGCTATTGGGGTCAAAGAGACAGAAAGAGAAGCATCCCGGATCCCCAAAACAGCAGACTGAAAAATCAAGCACAAAGCCCCCGTTACCAATTAATCCATCTCAGTTCCGGAAAGGGGCTTACCATGGTTCACTGGACTTTGTCCAGTCTTTATGTGAGACATCATATGGGTTAGTGGATGTATTTCCAGTTGAAGATCGCAAAAACGCTCTTTGTGAGGCGCTTGCAGAGATCAATTTACATGTAACAGAGGCTCAGAACACTGGAGGAGTTTGTTTTCCGTTGGGAAAGGGCATGTATCGTGTTCTTCATATACCTGAGGACGAAGCTGTTCTCTTGAATTCTAGGGAGAAGGCACCTTACATGATCTGCACAGAAGTTTTGAGATGTGAAATGCCAAGTAATCCCAAGGAGACATCCAGTTCTCAGAAACTTTCTCAAGGTGGAATTCCTTTGGCAAATGGAGATGCTCTGTTGCATAAACCACCCCCTTGGGCTTATCCATTGTCGACAGCACAAGAGGTGTACCGTAATAGCAATGATAGGATGTCCAGATCGACTGCTCAAGCAATTGACCAGGCAATGACTCATGTATCTGAGACAAAAGTCAAATTTGTTAGTCTGCATCTTTCTGTGGAAACACAAATAAATGGTCAGTCAGGGAAAACTGGAGTGGCTGATCTATGTAACGGCAGTCGGCATCCTGCTTCAATTTATAGAGAAGACTGGAATGATTTGGAATGGGTACGAGTTGTGTTGACAGCTGATCCAGGGGTTAGAATGGAAGATATTGAGGACCAAGCACCTCGTCGGAAGAAGGAGCACCGCCGCGTTCCAAGTATGGTAGCAATGGAGGAAGTAAAGGCTGCAGCAGCAAAAGGGGAAGCACCTATTGGACTCCCTTTGAAAGGTGCTGGTCAAGATTCATCAGAGACACAACCAAAGGCTAATGGAATTACTCCCAGAGCCAGTGATGCATTGTCTGGTGAACTTTGGGAGGCAAAGAAAGATAGGATATGCAAGGCTTCAATATATGGGAAATTACCTGGTTGGGACTTGCGATCTGTTATTGTTAAAAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTACGATATTTTCCAAGAGGCTGGTCTACCTCTCTGGCTGCGCCCTTATGAAGTTTTGTGTACTTCTTCGTATACAGCTTTAATTGAAACAATTCCAGATACGGCTTCTCTACATTCTATCAAAAGTAGATATCCCAACATCTCAAGTTTACGTGAATTCTTCAATGCTAAGTATGAAGAAAATTCTCCAAGTTTTAAACTTGCCCAGAGGAACTTTGTTGAGAGTATGGCAGGATATTCCCTGGTGTGCTACTTTCTACAGGTGAAGGATAGGCATAATGGGAACCTCCTATTGGATGAAGAAGGTCATATCATACACATTGATTTTGGCTTTATGCTTTCCAATTCACCTGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACACGTGAGCTTCTTGAGGTTATGGATTCTGATGCTGAGGGTGTTCCGAGCGAGTTCTTTGATTATTTTAAGGTTTTATGCATTCAAGGCTTCCTTACTTGCCGCAAGCATGCTGAGCGTATTATTCTTCTCGTTGAGATGTTGCAGGATTCAGATTTCCCATGCTTTAATGGTGGTACACGGACGATACAAAACTTGCGAAAGCGATTCCATCTCAGTTTAACAGAAGAGCAATGTGTCTCCTTGGTGCTTTCGCTTATCAGCAGTAGCCTGGATGCTTGGAGGACTCGGCAGTATGACTATTATCAGAAGGTTTTGAATGGAATATTGTGA 3393 0.4259 MVRFLGLSIGYADEPREIVSRSNLTSESSENGWLIRFFDSAFFCEWIAVSYLYKHDHAGVRDYLCNRMYTLPLQGLESYLFQICYMMIHRPSPSLDKFVIDICAKSLKIALKVHWFLMAELEDSDDNEGISRIQEKCQTAATLMGEWPPLIRPQTEPPSPGGKSQVLNRLLSSKNRLLSLTSSPPSLSLSFSPSSGNNLQGDGNPLSPDENKLFKRFMPSPKVRDAFLFRKSMDKDNDDKDGFFKRLLRDSKGDEELGQKIRDAFHFRKSSEKDDGDPEKDNFLKRLLRDSKDSRGDEEDSEKDGFFRRLLRDNKGEDEDVTSSSEGFFKKLFRDSKNEDRSYTKTMEDEEKEGFFKRLFRDSKNDSEDRTDTKTMEDEEKEGLFRKLFREKLEDRKDGSDRNDSRDVANSEEKCAKAAEEDEKEGFFRKLFKDKFEDKKNTNDKIEEGTASIEEEEPSEFSLFKRLFRVHPEDAKSSLVNENSNNSGLFESSPGTENFFRKLFKDRDRSIEDSELLGSKRQKEKHPGSPKQQTEKSSTKPPLPINPSQFRKGAYHGSLDFVQSLCETSYGLVDVFPVEDRKNALCEALAEINLHVTEAQNTGGVCFPLGKGMYRVLHIPEDEAVLLNSREKAPYMICTEVLRCEMPSNPKETSSSQKLSQGGIPLANGDALLHKPPPWAYPLSTAQEVYRNSNDRMSRSTAQAIDQAMTHVSETKVKFVSLHLSVETQINGQSGKTGVADLCNGSRHPASIYREDWNDLEWVRVVLTADPGVRMEDIEDQAPRRKKEHRRVPSMVAMEEVKAAAAKGEAPIGLPLKGAGQDSSETQPKANGITPRASDALSGELWEAKKDRICKASIYGKLPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLCTSSYTALIETIPDTASLHSIKSRYPNISSLREFFNAKYEENSPSFKLAQRNFVESMAGYSLVCYFLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGVPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSDFPCFNGGTRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQKVLNGIL* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0602 1130 MobiDBLite consensus disorder prediction 186 205 - -
Lja4g0602 1130 CDD PI4Kc_III_beta 838 1130 - -
Lja4g0602 1130 MobiDBLite consensus disorder prediction 812 836 - -
Lja4g0602 1130 Gene3D - 751 922 - -
Lja4g0602 1130 MobiDBLite consensus disorder prediction 186 212 - -
Lja4g0602 1130 SUPERFAMILY ARM repeat 54 125 IPR016024 -
Lja4g0602 1130 ProSiteProfiles PIK helical domain profile. 1 140 IPR001263 -
Lja4g0602 1130 Pfam Phosphatidylinositol 3- and 4-kinase 869 1067 IPR000403 -
Lja4g0602 1130 MobiDBLite consensus disorder prediction 514 531 - -
Lja4g0602 1130 SUPERFAMILY Protein kinase-like (PK-like) 586 1124 IPR011009 -
Lja4g0602 1130 PANTHER BNAA02G34040D PROTEIN 259 339 - -
Lja4g0602 1130 PANTHER PHOSPHATIDYLINOSITOL KINASE 259 339 IPR015433 GO:0046854|GO:0048015
Lja4g0602 1130 Gene3D - 927 1128 IPR036940 GO:0016301
Lja4g0602 1130 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 847 1115 IPR000403 -
Lja4g0602 1130 PANTHER PHOSPHATIDYLINOSITOL KINASE 324 368 IPR015433 GO:0046854|GO:0048015
Lja4g0602 1130 PANTHER PHOSPHATIDYLINOSITOL KINASE 12 255 IPR015433 GO:0046854|GO:0048015
Lja4g0602 1130 PANTHER PHOSPHATIDYLINOSITOL KINASE 350 1130 IPR015433 GO:0046854|GO:0048015
Lja4g0602 1130 SMART pi3k_hr1_6 869 1128 IPR000403 -
Lja4g0602 1130 MobiDBLite consensus disorder prediction 514 549 - -
Lja4g0602 1130 MobiDBLite consensus disorder prediction 395 423 - -
Lja4g0602 1130 Gene3D - 45 146 IPR042236 -
Lja4g0602 1130 PANTHER BNAA02G34040D PROTEIN 12 255 - -
Lja4g0602 1130 PANTHER BNAA02G34040D PROTEIN 350 1130 - -
Lja4g0602 1130 PANTHER BNAA02G34040D PROTEIN 324 368 - -
Lja4g0602 1130 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 872 886 IPR018936 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0602 Lja-Chr4 4974607 4982650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0602 1 1129 Lipid Metabolism Gene Families AT5G09350 67.684 0.0 1516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0602 K19801 - gmx:100778394 1857.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0602 4 4974607 4982650 Lja4g0602 4 4974607 4982650 ECH
Lja4g0602 4 4974607 4982650 Lja1g4511 1 58712594 58723919 PCT