Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0566 ATGGGAAAGTGGCTGGTTTTGGTGGTGATGCTGCTGCTTGTGGTGGTGTCTTTGACATTATCAATGGAAGCAGCAGGGGTCACATACGATGGAAGATCTCTTCTCATTGAAAACCAGAGGAAAATCCTCTTCTCTGGTTCAATTCACTATCCTCGCAGCACTCCTCAGATGTGGCCAGCATTGATAGAGAAAGCAAAAGAAGGAGGACTAAACGTGATTCAGACATATGTGTTTTGGAGTCTACATGAGCCCCAACCCGGACAGTATGATTTCAGCGGTAGATATGACTTGGTGAAATTCATCAAGGAAATTCAAGCTCAGGGCTTGTATGTATGTCTCAGGATAGGACCTTATATCGAAAGTGAATGGACATATGGGGGATTCCCATTTTGGTTACATGATGTCCCTGGTATTGTCTACCGAACGAACAACGAACCATTCAAGCTCTACATGCAAAAGTTTACTGCGAAAATAGTGAGCATGATGAAATCAGAGGGTTTATATGCTTCTCAAGGAGGTCCAATTATATTGTCACAGATTGAGAATGAATATCAAAATATTCAAAAATCATTTGGAGAAGAAGGATCACAGTATGTTGACTGGGCTGCCAAAATGGCGGTGGGTCTGCAGACTGGAGTGCCATGGGTTATGTGCAAGCAAACTGATGCTCCTGATCCAGTGATCAATACATGCAATGGAATGAAATGTGGAGAAACTTTTACAGGACCAAACTCCCCTGATAAGCCAGCATTGTGGACAGAGAATTGGACTTCTTTCTATCAAGTATACGGTGGTGAGCCATATATAAGGTCTGCTGAAGACATTGCATTCCATGTCACTCTTTTTATTGCAAGAAAAAATGGAAGCTACGTCAACTATTATATGTATCATGGTGGAACTAACTTTGGGAGGACAAGTTCTGCTTATGTTATAACATCCTATTATGACCAAGCTCCACTAGATGAATATGGTTTGTTAAGGCAACCCAAGTGGGGACATCTTAAGGAGCTTCATTCTGCAATCAAGTCTTGTTCTGCCACTTTGTTGCAAGGAATGCAGAGGAATTTCTCTTTAGGTCCATTTCAGGAGGGTTATGTTTTTGAAGAAGAAGGAGGAGGAGAATGTGCTGCTTTTCTTGTAAACGATGATAATGTGAATGTGTTTACTGTCCAATTTCGCAACAGATCATACCAATTGCCACCAAAGTCAATAAGTATCTTACCAGATTGCCAAAATGTGACCTTCAATACAGCAACTGTAAATACAAAGAACAATAGAAGAGTCATAAATCCAGTACAAGCTTTCAGCTCAGCTGACGAATGGGAGCAATTTCTAGATGAGATTCCTAACTTTGATGAAACATTGTTAATATCAAACTCATTACTTGAGCATATGAACTTAACCAAAGACAAAACGGATTACCTTTGGTATACTATTAGGTTTGAACATGATTTACCTTGCACTGAATCAGTACTTCATGTTCAGTCTGCTGCTCATGTTGTCCATGCTTTTGCGGATGGCACATACATAGGAGGGGCACATGGAAGTCATGATGTGAAGTCATTCACCTTACAGGTCCCAGTTACACTCAATGAAGGGACAACCAATATCTCTATACTCAGCGTTATGGTTGGACTCCCGGATTCAGGTGCGTTTCTAGAAAGAAGATTTGCTGGTTTAACCACAGTGGAAATTCAGTGCAGGGAAGAGTCCTATGACTTGACTAATTCTACTTGGGGATATCAGGTTGGACTAGTCGGAGAGCAACTAGATATATATCAAGAAGCAAATAGCAGTTCAACCCAATGGTCTCAATTAGGGAACATGACCAATCAGAGGCTAATTTGGTACAAGAGTGTGTTTGATTCACCCGATGGGAATGACCCTTTAACCTTGAACCTTGAGACGATGGGAAAAGGGGAGGCTTGGGTGAATGGAGAAAGCATTGGTCGCTATTGGATCTCCTTCCATGATTCCAAAGACCAGCCTTCACAAACACTGTATCATGTTCCAAGGTCGTTCCTTAAAGACAGTGGAAACGTTTTGGTTTTGTTTGAAGAGGAGGGTGGGAATCCTCTTGACATCTCCCTCAACACTGTTTCAACCACAAATTCAGAAGATAATCTCTCTAAATAA 2136 0.4134 MGKWLVLVVMLLLVVVSLTLSMEAAGVTYDGRSLLIENQRKILFSGSIHYPRSTPQMWPALIEKAKEGGLNVIQTYVFWSLHEPQPGQYDFSGRYDLVKFIKEIQAQGLYVCLRIGPYIESEWTYGGFPFWLHDVPGIVYRTNNEPFKLYMQKFTAKIVSMMKSEGLYASQGGPIILSQIENEYQNIQKSFGEEGSQYVDWAAKMAVGLQTGVPWVMCKQTDAPDPVINTCNGMKCGETFTGPNSPDKPALWTENWTSFYQVYGGEPYIRSAEDIAFHVTLFIARKNGSYVNYYMYHGGTNFGRTSSAYVITSYYDQAPLDEYGLLRQPKWGHLKELHSAIKSCSATLLQGMQRNFSLGPFQEGYVFEEEGGGECAAFLVNDDNVNVFTVQFRNRSYQLPPKSISILPDCQNVTFNTATVNTKNNRRVINPVQAFSSADEWEQFLDEIPNFDETLLISNSLLEHMNLTKDKTDYLWYTIRFEHDLPCTESVLHVQSAAHVVHAFADGTYIGGAHGSHDVKSFTLQVPVTLNEGTTNISILSVMVGLPDSGAFLERRFAGLTTVEIQCREESYDLTNSTWGYQVGLVGEQLDIYQEANSSSTQWSQLGNMTNQRLIWYKSVFDSPDGNDPLTLNLETMGKGEAWVNGESIGRYWISFHDSKDQPSQTLYHVPRSFLKDSGNVLVLFEEEGGNPLDISLNTVSTTNSEDNLSK* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0566 711 PANTHER BETA-GALACTOSIDASE 6 22 710 - -
Lja4g0566 711 Pfam Glycosyl hydrolases family 35 33 340 IPR031330 -
Lja4g0566 711 Gene3D Glycosidases 24 345 - -
Lja4g0566 711 Gene3D - 573 709 - -
Lja4g0566 711 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Lja4g0566 711 Pfam Beta-sandwich domain in beta galactosidase 348 420 IPR041392 -
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 308 324 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 639 655 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PRINTS Glycosyl hydrolase family 35 signature 612 626 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 PANTHER BETA-GALACTOSIDASE RELATED 22 710 IPR001944 GO:0004553|GO:0005975
Lja4g0566 711 SUPERFAMILY Galactose-binding domain-like 578 703 IPR008979 -
Lja4g0566 711 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Lja4g0566 711 SUPERFAMILY Galactose-binding domain-like 404 560 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0566 Lja-Chr4 4706602 4711563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0566 1 703 Glycoside Hydrolase AT5G63800 64.880 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0566 - - gmx:100782510 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0566 4 4706602 4711563 Lja4g0566 4 4706602 4711563 ECH
Lja1g4461 1 58009317 58016473 Lja4g0566 4 4706602 4711563 ECH