Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4461 ATGGGAAAATGGGTGGTTCTGCTAGTGCTACTGGTGGTGTTGTTAAAAGTAATTGAAGCTGCAGAGGTGACATATGATGGAAGATCACTCATCATTGATGGACAAAGAAAACTTCTCTTCTCTGGTTCAATTCATTATCCTCGCAGCACTCCTCAGATGTGGCCAGGTTTGATAGCGAAAGCAAAACAAGGAGGATTGGACGTTATTCAGACTTATGTGTTTTGGAATCTTCATGAACCCCTGCAACCTGGACAGTATGATTTCAGTGGAAGATATGACTTGGTGAGATTCATAAGGGAAATTCAAGCTCAAGGACTCTATGTCTGCCTCAGAATTGGACCTTTCATCGAGGCTGAATGGACATACGGGGGATTCCCATTTTGGTTACATGATGTCCCTGGGATTGTCTACAGATCAGACAATGAACCTTTCAAGTTCTACATGCAAAATTTTACAACAAAAATTGTGAACATGATGAAAGCAGAGGGTTTATATGCTTCACAAGGAGGCCCAATCATATTGTCACAGATTGAGAATGAATATCAAAATGTCCAAAAGGCATTTGGCATAGCAGGAAAACAATATGTTCAATGGGCTGCAAAAATGGCTGTGGGCCTTCAGACTGGCGTACCATGGGTTATGTGCAAGGAAGATGATGCTCCTGATCCTGTGATCAATACATGCAATGGCATGTACTGTGGAAAAACTTTTACCGGACCAAACTCCCCCAATAAGCCTAGGCTGTGGACGGAGAACTGGACGTCTTTCTATCAAGTGTATGGTGGACTCCCATATATAAGGTCTGCTGAAGACATTGCACTTCATGTCACTCTTTTTATTGCAAAAAATGGAAGCTATGTCAACTATTATATGTATCATGGTGGAACCAACTTTGGGAGAACAGCCTCAGCTTATTGTATAACAGGATATTATGATCAAGCCCCACTTGATGAATATGGTTTGTTCAGGCAACCAAAATGGGGACATCTCAAGGAATTGCATGCTGCAATCAAGTCTAACTCCACAACTATATTGCAAGGAGTGCAGAGTAACTTCTCTTTAGGTCGTCTCCAAGAGGCTTGTGTTTTTGAAGAAGAAAAAGGAGAATGTGTTGCTTTCCTTATAAACTATGATGGAGGAAACAATGTTTCTGTCCAGTTCCGGAACAAATCATATGAATTGCTCCCCAAGTCCATAAGTATCTTACCAGATTGCCAGAATGTGATTTTCAACACTGCAAATGTTACTACAACAAGCAACAGAAGGATCATAAGTCCTAGACAAAACTTCAGCTCAGTGGATGATTGGGAGCAATTCCAAGATGTGATTCTAAACTTTGATGACACCTCACTAAAATCAAATTCATTACTCGAGCAAATGAACACAACAAAAGACAAATCAGATTACCTTTGGTATACTCTCAGGTTTGAATATAATCTATCTTGCAGTGAGCCAACACTTAATGTTCGCTCTGCTGCTCATGTTGCCCATGCTTTTGTGAACAACACATACATAGGAGCTGTACATGGAAATCATGATGTAAAGAATTTCACCTTAGAGTTCCCGGTTACACTAAATGAAGGGGCAAACAACCTTTCTATACTCAGCGTCATGGTTGGACTTGCGGATTCAGGGGCATATCTTGAAAGGAGATTTGCTGGTTTAATCAGTGTGGGACTTCAGTGCAGTGAGAAGGAGTCTCTTCATTTGACCAAGTCTACATGGGGATATCAGGTTGGATTACTAGGGGAGCAACTAGAAGCATATAATGGACAAAATAGCAGTGATGTTGAATGGACTCAACTGGGGAATATTATGGATCAGACTCTCATTTGGTACAAGACTACATTTGACACACCTGAGGGGGTTGATCCTGTTGCATTGGACCTTAGCTCAATGGGAAAAGGCGAGGCTTGGGTAAATGGACAAAGCATTGGTCGCTATTGGATTTTGTTTCATGATTCCAAAGGCAAACCTTCACAATCACTATATCATGTGCCTCGGTCTTTCCTTAAAGACAAAGGAAACAACACTTTGGTTTTGGTGGAGGAAGGTGGTGGGAACCCTCTTCATATCTCAGCGAACACTGTTTCAGTCACAGATTTACATGAAAACTCTTCTAAATTATCATTCCCTTCCTCTGCTTAG 2148 0.412 MGKWVVLLVLLVVLLKVIEAAEVTYDGRSLIIDGQRKLLFSGSIHYPRSTPQMWPGLIAKAKQGGLDVIQTYVFWNLHEPLQPGQYDFSGRYDLVRFIREIQAQGLYVCLRIGPFIEAEWTYGGFPFWLHDVPGIVYRSDNEPFKFYMQNFTTKIVNMMKAEGLYASQGGPIILSQIENEYQNVQKAFGIAGKQYVQWAAKMAVGLQTGVPWVMCKEDDAPDPVINTCNGMYCGKTFTGPNSPNKPRLWTENWTSFYQVYGGLPYIRSAEDIALHVTLFIAKNGSYVNYYMYHGGTNFGRTASAYCITGYYDQAPLDEYGLFRQPKWGHLKELHAAIKSNSTTILQGVQSNFSLGRLQEACVFEEEKGECVAFLINYDGGNNVSVQFRNKSYELLPKSISILPDCQNVIFNTANVTTTSNRRIISPRQNFSSVDDWEQFQDVILNFDDTSLKSNSLLEQMNTTKDKSDYLWYTLRFEYNLSCSEPTLNVRSAAHVAHAFVNNTYIGAVHGNHDVKNFTLEFPVTLNEGANNLSILSVMVGLADSGAYLERRFAGLISVGLQCSEKESLHLTKSTWGYQVGLLGEQLEAYNGQNSSDVEWTQLGNIMDQTLIWYKTTFDTPEGVDPVALDLSSMGKGEAWVNGQSIGRYWILFHDSKGKPSQSLYHVPRSFLKDKGNNTLVLVEEGGGNPLHISANTVSVTDLHENSSKLSFPSSA* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4461 715 SUPERFAMILY Galactose-binding domain-like 574 693 IPR008979 -
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 110 129 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 54 72 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 635 651 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 33 50 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 167 182 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 PRINTS Glycosyl hydrolase family 35 signature 608 622 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 Pfam Glycosyl hydrolases family 35 29 336 IPR031330 -
Lja1g4461 715 SUPERFAMILY Galactose-binding domain-like 399 555 IPR008979 -
Lja1g4461 715 PANTHER BETA-GALACTOSIDASE 6 19 709 - -
Lja1g4461 715 Gene3D - 572 707 - -
Lja1g4461 715 Pfam Beta-sandwich domain in beta galactosidase 345 415 IPR041392 -
Lja1g4461 715 SUPERFAMILY (Trans)glycosidases 22 338 IPR017853 -
Lja1g4461 715 Gene3D Glycosidases 20 341 - -
Lja1g4461 715 Gene3D - 437 571 - -
Lja1g4461 715 Pfam Beta-galactosidase jelly roll domain 608 682 IPR025300 -
Lja1g4461 715 PANTHER BETA-GALACTOSIDASE RELATED 19 709 IPR001944 GO:0004553|GO:0005975
Lja1g4461 715 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 169 181 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4461 Lja-Chr1 58009317 58016473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4461 1 700 Glycoside Hydrolase AT5G63800 63.188 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4461 - - lja:Lj1g3v1362130.2 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4461 1 58009317 58016473 Lja1g4461 1 58009317 58016473 ECH
Lja1g4461 1 58009317 58016473 Lja4g0566 4 4706602 4711563 ECH