Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0546 ATGGGGGGTCTTTGTTCCAAGTCTGCCAAAGGTGAAAAGGTGCTTGTTGCCAAGTCTAGAGGACAATATGATAACCACAAATCTGGTGGTAAGAACTACAAGCCAACCATGGTAAGTGATTTGACAACTGCAGGAGAGGGAATGGAAGAGAAAAAGCAGAAGCAAGAACATGATGCTGCAGGGACTAGACCAGATGATGATTTTTATGATGGAATCCCACGCTATAATGATTCTTTTCCTCACAAGTCTAGGTCAGTCAAATCAAGTAAAGCTGCTGTGGCAAAGGTCTCAGAGGTGAGCTTCCGCCTGGGCAGAGGTTTTGAGAAGGCAGTTGACGTATTGGACACTCTTGGAAGTAGCATGACAAATTTAAACGCTAGCAGTGGGTTTGTATCTGGAGCTGCAATGAAGGGGAATGAAATTGGTATTTTAGCATTTGAGGTTGCAAACACTATTGTCAAGGGTTTTAGTCTTATGGAATCTCTTTCAACAAATAACATTAAGCATTTAAAAGAAGAGGTGCTGAAGTTAGAGGCTGTGCAAGATTTAGTATCAAAGGATATGGATGAACTTCTAAGGATTGTTGCTGCAGACAAGAGGGATGAGTTGAAAGTCTTTTCTGACGAGGTGATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGTTACTTTGAGAAAATTAGCAGAGAACTTAATTCTCAAAGACAAACGAAGGAAGAGGCAGAATTATTAATGCAGCAATTAATGAGTTATGTTCAATATACAGCTGAGTTATACCATGAGTTACATGCTTTGGATAGATTTGCACTAGATTATCAGCACAAGCGTGAAGAGGATGATAATTCAGGCACAGCTCAAAGTGGTGATAGCCTTTCAATCTTGAAGGGAGAACTTAAAAGTCAAAAGAAGCAAGTTAAGCATTTGAAGAAAAAGTCACTTTGGTCCAGAAGTTTGGAGGAGGTTATGGAGAAGCTTGTGGACATAGTACATTATTTGCATTTGGAGATTAACAATGCCTTTGGCAGTGCAGATTCCGGTAAACCATTAACTCAAACAAGCAGCAACCACCAAAGATTGGGTCCTGCAGGACTTGCTTTGCATTATGCAAATATAGTGCTCCAAATTGATACTCTGGTCGCTAGATCCAGTTATATGCCTGCAAATACAAGGGATACATTATATCAGAGCTTGCCTCCTAATATAAAATTAACTTTGCGTTCCAAATTGCCAACCTTTCATGTTGTAAAAGAGCTCACTATGACAGATATTAAAGATGAGATGGAGAAAACATTGCATTGGCTGGTTCCAATGGCTACAAACACAGCCAAGGCGCATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGCTCCGAGCTAAATAAGAAGACCTCGAAGACTGATGTAATGCGGATCGAAACATTTCACCACGCAGATAAAGAAAAAGTTGAAATTTATATTCTTGAACTTCTTTTGTGGCTTCACCACTTGGCCGTAAAAAGTAAACCTGGCAGTGATGCTGGAGAAATTAGGTCTACCATCAACAAGTCCCCTGCTCTGCAAAAGACAAATCCAGAGTCTACAAATGCCCTACCACCATCGCTAACAGTTGAAGAGCAGATCATGCTGAAGGGTGTAATTAGTAACAAAATTCGAATCAGAGGAAATAGTAAAAGCTTGGACTATGATAATGTAAACACTGGGTTGACAGATAGCAGAATACTGATCAAGAGTAGCAGTTATTCTTATTCAGCATCAAGTAGAAGCAAGGAACTATCTTTAAATAAAATTTCGTCTAAGCTTCCTGTGATTGATTTTGGTATTGACAAAAAGAGAACATTGGATGTGATTGACAGACTAGATGTGGCCAGATAA 1893 0.4015 MGGLCSKSAKGEKVLVAKSRGQYDNHKSGGKNYKPTMVSDLTTAGEGMEEKKQKQEHDAAGTRPDDDFYDGIPRYNDSFPHKSRSVKSSKAAVAKVSEVSFRLGRGFEKAVDVLDTLGSSMTNLNASSGFVSGAAMKGNEIGILAFEVANTIVKGFSLMESLSTNNIKHLKEEVLKLEAVQDLVSKDMDELLRIVAADKRDELKVFSDEVIRFGNRSKDPQWHNLDRYFEKISRELNSQRQTKEEAELLMQQLMSYVQYTAELYHELHALDRFALDYQHKREEDDNSGTAQSGDSLSILKGELKSQKKQVKHLKKKSLWSRSLEEVMEKLVDIVHYLHLEINNAFGSADSGKPLTQTSSNHQRLGPAGLALHYANIVLQIDTLVARSSYMPANTRDTLYQSLPPNIKLTLRSKLPTFHVVKELTMTDIKDEMEKTLHWLVPMATNTAKAHHGFGWVGEWANTGSELNKKTSKTDVMRIETFHHADKEKVEIYILELLLWLHHLAVKSKPGSDAGEIRSTINKSPALQKTNPESTNALPPSLTVEEQIMLKGVISNKIRIRGNSKSLDYDNVNTGLTDSRILIKSSSYSYSASSRSKELSLNKISSKLPVIDFGIDKKRTLDVIDRLDVAR* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0546 630 Pfam Domain of unknown function (DUF3475) 143 199 IPR021864 GO:0045927
Lja4g0546 630 Pfam Protein of unknown function (DUF668) 363 448 IPR007700 GO:0045927
Lja4g0546 630 MobiDBLite consensus disorder prediction 509 538 - -
Lja4g0546 630 Coils Coil 229 249 - -
Lja4g0546 630 MobiDBLite consensus disorder prediction 16 67 - -
Lja4g0546 630 MobiDBLite consensus disorder prediction 514 538 - -
Lja4g0546 630 Coils Coil 296 316 - -
Lja4g0546 630 PANTHER OS01G0873900 PROTEIN 2 630 IPR045021 GO:0045927
Lja4g0546 630 PANTHER DUF668 FAMILY PROTEIN 2 630 - -
Lja4g0546 630 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0546 Lja-Chr4 4479451 4487914 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0546 - - gmx:100804075 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0546 4 4479451 4487914 Lja4g0546 4 4479451 4487914 ECH
Lja4g0546 4 4479451 4487914 Lja1g4417 1 57326650 57334369 PCT