Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4417 ATGGCAACTGCTTCCAATTCAAAGATTGAGTTCCTCGTCTGGTTGTCTCAAATCATGGGCGGTCTCTGCTCCCGCTCCGCCACCGTTGACCGCGTCTTCGCCACCACCACCACCACCACCGATGCCGCCGCCACCGCTTCTCCTTCCAACAAAACCACCACCACCGCTGATTTCACCACTCCGCCTCAACCACGCGAAACCATGGACCGAAACCTTCCAGAACCTTCCGATTTCTACGACGGAATCCCTCGTTTCCCCGATAAACCTAGGGCTAGAGCATCCAAGGTTTCGGAGGTGAGTTCGCGGCTAGGAAGAGTTGGATTGGAGGTTTTGGACACTCTAGGCAGCAGCGTTACCAATCTGAACTCCGGCGGTGGATTCGTTTCTGGTGCTGCTATCAAGGGGAATGAGGTTGCCATCTTAGCGTTTGAAGTTGCCAACACCCTCGTCAAAGGTTTTCATCTCGTGCAATCTCTCTCGCCTCAAAATATCAGGCATTTGAATGAGGACGTGCTTCTTTCAAAGTCTGTGCAGGATTTGGTGTCCAAGGATAGGGATGAGCTTCTTAGCATTGTAGCTGCTGATAAGAGACAGGAGTTGAAAGTTTTTTCTGATGAGGTGATTCGATTTGGGAATCGTTCGAAGGATCCTCAGTGGCATAACTTGGAACGTTACTTTGAGAAGATTAGCAAGGAATCAAATGCTCAGAGACTATCAAGAGATGAGGCAGAATCAATCATGCAGCAGTTGATGAACCTGGTTCAATATACAGCTGAATTGTACCATGAACTTCATGCTTTAGATAGATTTCAACAAGATATCCAGCGTAAGAGTGAAGAGGAGGATAACAAAGGTGATGACCTTGCATTCTTGAGGGCTGAAGTTAAAAGTCAAAAGAAGCAAATTAAACATTTAAAGAAAAAATCACTCTGGTCTAGAAGTTTGGAGGAGGTTGTAGAGAAGCTTGTAGATATTGTCCATTTTTTACATTTGGAGATAAGCAATGCCTTTGGAAGTGAAGATGGCTACAAACCAATAATTGGACACATGAGCAATCGCCAAAGACTAGGTCCTGCTGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTGTAGCCAGATCTAGTGCTATGCCTTCGAATTTAAGGGATACATTATATCAAAGCTTGCCTCCTAATATAAAATCAGCTCTACGTTCCAAATTACCATCCTTTCGTGTTGTAGAAGAGCTAACTGTAGCAGATATCAAAGAAGAGATGGAGAAAACATTACAATGGTTGGTTCCCATTGCCACAAACACATCCAAAGCACATCATGGTTTTGGTTGGGTCGGGGAGTGGGCAAACACAGGCTCTGAAGCGAATAGGAAGGCTGTCCAGACTGGTATCATGCGGATCGAGACATTCCATCATGCAGATAAAGGCAAAGTAGAATACTATATTGTGGACCTTCTGTTATGGCTTCAACGTTTGGCCATTAAAATAAAAGCTGGCAGCGATGCTGGTAAAGTGAAGTCTCCTATGAAATCTTCTGCTGGCACTACCTCGGAAAAGACGAACAAGGAGTCTACAAATGCCCTATCACCAATATTAACAATTGATGAGCAAACCATGCTGCAGGATGTAAGTAAGAAAGCACTAATTAAAGGGATCAGTAAAAGCATGGACTTTGACAGTCTCAGGAGTAGGTTGAGGGAGAACTACAGACTCACCAAGAGTTGGAGTCTTTCATCAACTAAAAGCAAGGAACTCTCTTTTAATAGGATTTTGTCTAAGCTTCCTGTGATTGATTTTGACATCGACAAAGAAAGAGCATTGAATGTGATAGACAGACTAGATGTGGTAAGATAA 1863 0.4391 MATASNSKIEFLVWLSQIMGGLCSRSATVDRVFATTTTTTDAAATASPSNKTTTTADFTTPPQPRETMDRNLPEPSDFYDGIPRFPDKPRARASKVSEVSSRLGRVGLEVLDTLGSSVTNLNSGGGFVSGAAIKGNEVAILAFEVANTLVKGFHLVQSLSPQNIRHLNEDVLLSKSVQDLVSKDRDELLSIVAADKRQELKVFSDEVIRFGNRSKDPQWHNLERYFEKISKESNAQRLSRDEAESIMQQLMNLVQYTAELYHELHALDRFQQDIQRKSEEEDNKGDDLAFLRAEVKSQKKQIKHLKKKSLWSRSLEEVVEKLVDIVHFLHLEISNAFGSEDGYKPIIGHMSNRQRLGPAGLALHYANIVLQIDTLVARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIATNTSKAHHGFGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQRLAIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTNALSPILTIDEQTMLQDVSKKALIKGISKSMDFDSLRSRLRENYRLTKSWSLSSTKSKELSFNRILSKLPVIDFDIDKERALNVIDRLDVVR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4417 620 MobiDBLite consensus disorder prediction 40 66 - -
Lja1g4417 620 MobiDBLite consensus disorder prediction 40 77 - -
Lja1g4417 620 Pfam Domain of unknown function (DUF3475) 140 196 IPR021864 GO:0045927
Lja1g4417 620 PANTHER OS01G0873900 PROTEIN 10 620 IPR045021 GO:0045927
Lja1g4417 620 MobiDBLite consensus disorder prediction 506 527 - -
Lja1g4417 620 MobiDBLite consensus disorder prediction 512 527 - -
Lja1g4417 620 Pfam Protein of unknown function (DUF668) 355 439 IPR007700 GO:0045927
Lja1g4417 620 PANTHER DUF668 FAMILY PROTEIN 10 620 - -
Lja1g4417 620 Coils Coil 288 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4417 Lja-Chr1 57326650 57334369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4417 - - gmx:100779607 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4417 1 57326650 57334369 Lja1g4417 1 57326650 57334369 ECH
Lja4g0546 4 4479451 4487914 Lja1g4417 1 57326650 57334369 PCT