Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0539 ATGGCAGCTGAGCTTATCAATGCTGCAACAAGTGAGAAACTGACTGAAGTTGATTGGATAAAAAATATTGAAATCTGTGAATTAGTTGCTCATGATCCAAGTCCAAGGCAAGCTAGAGATGTTGTCAAAGGTATAAAAAAGAGACTGGGTAACAAAAACCCCGACACTCAACTTTATGCTGTCAAGTTACTGGAAATGTTGATGAACAATATTGGAGATCGTATTCATGAGCAGGTGATTGATACAGGAATTATTCCTATACTTGTGAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCAACACAGACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGAATTGGTGAGTGCTGGGGTGCAATTTCCTCAAAGGGCTGAAGTTGTCCAATCCAATCGTCCTAGATCACAACCTAATAGGGCTAATAATGTACCAAACAGGGAGAAGCCCTCACTTAGACATGAAGTGCTTGCTCAGCCAGAGTCCCAAACTGTTCCAGAATCTAGCATCATTCAAAAAGCTAGTAATGCATTGGAAGTTCTAAAAGAAGTCCTTGATGCTGTTGATGCCCAAAATCCTCAGGCAGGAAGAGATGAGTTCACCCTCGATCTTGTGGAACAATGTTCATTTCAGAAGCAGAGGGTAATGCATCTTGTGATGGCTTCTCGAGATGAGCGGATTGTTTCCCGAGCAATTGAATTGAATGAGCAGCTTCAGAAAGTTCTTGCTAGACATGATGAACTTCTCTTTGGCAGAGCTACAGCAACTGCTAAACACTTTGACCGTGAAGAAGCAAGGGAGGAGGAGGAGGAGGAAGCTGAACAGTTGTTCCGAAGATTACGCAAAGGAAAGGCTTGTGCAAAGCCTCAAGATGAAGAGACTAAACCTGAGTACCCTTCCTTGGGTTTGCTTGAAGAGCGACTCAACCGTCCTCTAATCAGACCACTCGCTTCGGAGCCATCTCGTGAAGCTAATGCTCGTCCTGCACCTGCTGTAGTTCCTCCTCCAAATTCAAATCACGGCAGGGAGCTTTCTCATCTGGCGATTCCTCCACCACCTACAAAGCACATTGAGAGGGAGAGATATTTTCAGGAGAATAAGAAGGATGGTACAACTTTGGCTGGACACTTGAGAGGCCTCTCCTTGCATAGTTATAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGATTGA 1251 0.4365 MAAELINAATSEKLTEVDWIKNIEICELVAHDPSPRQARDVVKGIKKRLGNKNPDTQLYAVKLLEMLMNNIGDRIHEQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYELVSAGVQFPQRAEVVQSNRPRSQPNRANNVPNREKPSLRHEVLAQPESQTVPESSIIQKASNALEVLKEVLDAVDAQNPQAGRDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDELLFGRATATAKHFDREEAREEEEEEAEQLFRRLRKGKACAKPQDEETKPEYPSLGLLEERLNRPLIRPLASEPSREANARPAPAVVPPPNSNHGRELSHLAIPPPPTKHIERERYFQENKKDGTTLAGHLRGLSLHSYNGSSSHSGSFDFSD* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0539 416 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 416 - -
Lja4g0539 416 MobiDBLite consensus disorder prediction 144 163 - -
Lja4g0539 416 SUPERFAMILY GAT-like domain 145 268 - -
Lja4g0539 416 CDD VHS 2 132 - -
Lja4g0539 416 MobiDBLite consensus disorder prediction 370 384 - -
Lja4g0539 416 Pfam VHS domain 4 113 IPR002014 GO:0035091|GO:0043130
Lja4g0539 416 Pfam GAT domain 193 266 IPR004152 GO:0035091|GO:0043130
Lja4g0539 416 CDD GAT_GGA_like_plant 187 265 - -
Lja4g0539 416 SMART VHS_2 2 136 IPR002014 GO:0035091|GO:0043130
Lja4g0539 416 Coils Coil 188 208 - -
Lja4g0539 416 ProSiteProfiles GAT domain profile. 179 267 IPR004152 GO:0035091|GO:0043130
Lja4g0539 416 PANTHER TOM1-LIKE PROTEIN 1 416 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lja4g0539 416 MobiDBLite consensus disorder prediction 144 169 - -
Lja4g0539 416 MobiDBLite consensus disorder prediction 335 387 - -
Lja4g0539 416 SUPERFAMILY ENTH/VHS domain 4 141 IPR008942 -
Lja4g0539 416 Gene3D - 178 276 IPR038425 -
Lja4g0539 416 Gene3D - 2 138 IPR008942 -
Lja4g0539 416 ProSiteProfiles VHS domain profile. 9 140 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0539 Lja-Chr4 4408220 4413775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0539 - - gmx:100802949 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0539 4 4408220 4413775 Lja4g0539 4 4408220 4413775 ECH
Lja4g0539 4 4408220 4413775 Lja1g4412 1 57245423 57257680 PCT