Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4412 ATGGCAGCTGAGCTAGTCAATGCTGCAACAAGCGAGAAGCTGGCTGAAACGGATTGGGCAAAAAATATTCAAATCTGTGAGTTAGTTGCACATGATAAAAGGCAAGCTAGAGACGTTGTTAAAGCCATCAAAAAGAGGCTGAGTAACAAACACCCCAATACTCAATTTTATTCTGTCATGTTGCTGGAAATGTTGATGAACAATACTGGAGAACATATTCATGAGCAGGTGATTGATACAGGCGTTATTCCTATTCTTGTGAAACTTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGAGGATATTTCTCCTACTAGATGCCACTCAAACATCCCTTGGCGGTGCTTCTGGAAAGTTTCCGCAGTATTATAATGCATATTATGAGTTGGTGAATGCCGGAATACGATTTCCTCAAGGGCCTCAGCCTCAAGTAGTCCAATCAAATCACGCTAGTTCCCAACCTAGTACGATTGGTAATGTACCAAACAGGGAGCAGGCCTCACCTAGACATGAAGGAGTTGTTCCGCAAGCGGAGTCCCAGAATGTTTCTGAACCTAGCATTCTTCAGAAGGCTAGTAATGCATTAGAAGTTCTAAAAGAAGTCCTTGATGCTGTTGATGTTCAACATCCTGAGGGAGCAAAGGATGAATTCACCCTTGATCTTGTAGAACAATGTTCCTTTCAGAAGCAAAGAGTAATGCATCTTGTGATGACTTCTCGAGATGAAAGCGTAGTTTCTCGAGCAATCGAGTTAAATGAGAAGCTCCAGAGAGTTCTTGCAAGACATGATGATCTCATTTCCGGAAGAGCCACAACAAATACTACTTGTCAGAACGTTCTTGCAAGGCATGATGATCTCATTTCCGCCAGAGGCAGAGCCGCAACAAATGCTCCTACTCGAATCGACCACAATGAAGAAGAGGAGGAGGAAGAGGAGCCGGAACAGTTAGTCCGAAGATTACGCAAAGGAAAGGCGTGCGCAAGGCCTGAAGATAAGGACACTGAAACAAACATCTCTCACTTGGATTTGCGTGGTGAGAGACTCAATCGACCTCTTATAAGATCAAGACCGCTTTCGTTAGAGCCACCAAGAGAACCTGACACTCGTTCTTCTCCACCTCCCATGATCCCACCTCCCCGTCCAAAACAGAACGGGGAGCTTCCTCATGTGGCGATTCCACCACCGCCTGCAAAGCATGTTGAGAGGGAGAAGTTTTTTCAGGAGAACAAGGATGGCTCTAATTTGTCTGGCCACATGAGAGGCCTCTCCTTGCATAGTCGTAATGGTAGCAACTCTCTCAGTGGAAGCTTTGATTTCAGTGAATGA 1329 0.45 MAAELVNAATSEKLAETDWAKNIQICELVAHDKRQARDVVKAIKKRLSNKHPNTQFYSVMLLEMLMNNTGEHIHEQVIDTGVIPILVKLVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYELVNAGIRFPQGPQPQVVQSNHASSQPSTIGNVPNREQASPRHEGVVPQAESQNVSEPSILQKASNALEVLKEVLDAVDVQHPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDESVVSRAIELNEKLQRVLARHDDLISGRATTNTTCQNVLARHDDLISARGRAATNAPTRIDHNEEEEEEEEPEQLVRRLRKGKACARPEDKDTETNISHLDLRGERLNRPLIRSRPLSLEPPREPDTRSSPPPMIPPPRPKQNGELPHVAIPPPPAKHVEREKFFQENKDGSNLSGHMRGLSLHSRNGSNSLSGSFDFSE* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4412 442 MobiDBLite consensus disorder prediction 367 396 - -
Lja1g4412 442 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
Lja1g4412 442 MobiDBLite consensus disorder prediction 315 352 - -
Lja1g4412 442 SUPERFAMILY GAT-like domain 151 270 - -
Lja1g4412 442 PANTHER TOM1-LIKE PROTEIN 274 441 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lja1g4412 442 CDD GAT_GGA_like_plant 188 266 - -
Lja1g4412 442 Gene3D - 178 277 IPR038425 -
Lja1g4412 442 PANTHER TOM1-LIKE PROTEIN 1 274 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lja1g4412 442 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 274 441 - -
Lja1g4412 442 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 274 - -
Lja1g4412 442 Pfam GAT domain 194 269 IPR004152 GO:0035091|GO:0043130
Lja1g4412 442 Gene3D - 2 136 IPR008942 -
Lja1g4412 442 CDD VHS 2 130 - -
Lja1g4412 442 MobiDBLite consensus disorder prediction 141 186 - -
Lja1g4412 442 MobiDBLite consensus disorder prediction 141 164 - -
Lja1g4412 442 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Lja1g4412 442 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Lja1g4412 442 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Lja1g4412 442 Coils Coil 189 209 - -
Lja1g4412 442 MobiDBLite consensus disorder prediction 411 442 - -
Lja1g4412 442 MobiDBLite consensus disorder prediction 291 442 - -
Lja1g4412 442 Pfam VHS domain 5 111 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4412 Lja-Chr1 57245423 57257680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4412 - - mtr:MTR_3g097280 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4412 1 57245423 57257680 Lja1g4412 1 57245423 57257680 ECH
Lja4g0539 4 4408220 4413775 Lja1g4412 1 57245423 57257680 PCT