Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0538 ATGAATTCTGCAATTCATGCACCGTCTTCGCCTTCATCTTCTTCTTGCTCCTACATTCGTCCTCTTCCATGCATCACTTGTGCTTCTCGTAATTTCAAGTTTCCTATGCTGTTGCCGCAGGCAACATGTACCACTCAAAAGATGCATCGCTGCTCTGGAGGCAACATGGAAGCTTCTACTAACCCTAGTCCATTGAAAAATTGTATAGTTGGCAAATATAATCCAGGATGGTCTGAAACACAACCCTTGTTTTCCAAGCAATCACTCAACAGACACTTGTTGCCAGTGGAAGCTCTAGTCACTCCAACTGCTCAAGATGTATCTGATACACCTTTTCTTGGTGATGATAAGATTGGAGTGTTACTGTTAAACCTTGGAGGTCCAGAGACTCTAGACGATGTGCAGCCTTTTTTGTTCAATCTTTTTGCTGATCCAGATATTATTCGTTTGCCAAGGTTATTTGGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTGTCTGTTTTAAGGGCACCAAAGAGCAAAGAAGGCTATGCTTCAATTGGTGGTGGTTCCCCCCTTAGACGTATGACTGATGCTCAGGCTGAAGAGTTGAGAAAATGTCTTTGGGAAAAAAATGTCCCAGCCAATGTGTATGTTGGAATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAGCAGATTAAAAGGGATGGAATCACAAAGCTTGTTGTGCTTCCACTTTATCCACAATTTTCAATTTCAACCAGCGGCTCAAGTCTGCGTCTCTTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCACACGGTAATACCTTCATGGTACCAGCGTGAAGGATACATAAAGGCCATGGTAAATTTAATTGAAAAAGAGCTAAAGGGTTTTGACTGCCCTGAGAAGGTCATGATATTCTTTAGTGCGCATGGGGTGCCACTTGCTTATGTAGAAGAGGCTGGTGATCCATACAAGGCAGAGATGGAGGAATGCGTAGATTTGATCATGGAAGAGCTTGAGAGAAGAAAGATAACTAATGCATACACCCTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTACACCGATGACACAATAGTTGAACTTGGGAAAAACGGAGTAAAAAGTCTGCTGGCTGTGCCAATTAGCTTTGTCAGCGAACATATTGAAACTCTTGAAGAAATTGATGTTGAATACAAAGAGTTGGCTCTAGAATCCGGTATAGAAAAATGGGGTCGTGTTCCTGCACTGGGATGTGAACCCACATTCATTTCAGATTTAGCAGATGCTGTAATTGAGAGCCTTCCATATGTTGGTGCAATGGCAGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCCCTTGGAAGTGTAGAAGAATTATTGGCGGCATATGACTCGCAGCGTAGGGAGTTGCCGCCACCAGTACTGGTGTGGGAATGGGGGTGGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGCTTGCTGTGCTTCTTCTGTTGTTTTTAGAAGTCACCACTGGTGAAGGATTTTTGCACCAGTGGGGAATATTGCCCTTGTTTAGGTGA 1593 0.4357 MNSAIHAPSSPSSSSCSYIRPLPCITCASRNFKFPMLLPQATCTTQKMHRCSGGNMEASTNPSPLKNCIVGKYNPGWSETQPLFSKQSLNRHLLPVEALVTPTAQDVSDTPFLGDDKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFGFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRMTDAQAEELRKCLWEKNVPANVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYIKAMVNLIEKELKGFDCPEKVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELERRKITNAYTLAYQSRVGPVEWLKPYTDDTIVELGKNGVKSLLAVPISFVSEHIETLEEIDVEYKELALESGIEKWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPVLVWEWGWTKSAETWNGRAAMLAVLLLLFLEVTTGEGFLHQWGILPLFR* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0538 530 Hamap Coproporphyrin III ferrochelatase [cpfC]. 116 441 IPR001015 GO:0004325|GO:0006783
Lja4g0538 530 ProSitePatterns Ferrochelatase signature. 307 328 IPR019772 GO:0004325|GO:0006783
Lja4g0538 530 PANTHER FERROCHELATASE 79 451 IPR001015 GO:0004325|GO:0006783
Lja4g0538 530 SUPERFAMILY Chlorophyll a-b binding protein 485 525 - -
Lja4g0538 530 CDD Ferrochelatase_C 286 424 IPR033644 -
Lja4g0538 530 Pfam Ferrochelatase 117 440 IPR001015 GO:0004325|GO:0006783
Lja4g0538 530 CDD Ferrochelatase_N 118 280 IPR033659 -
Lja4g0538 530 Gene3D - 279 422 - -
Lja4g0538 530 Gene3D - 117 440 - -
Lja4g0538 530 SUPERFAMILY Chelatase 116 447 - -
Lja4g0538 530 TIGRFAM hemH: ferrochelatase 116 441 IPR001015 GO:0004325|GO:0006783
Lja4g0538 530 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 79 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0538 Lja-Chr4 4401312 4407297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0538 K01772 - gmx:100803481 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0538 4 4401312 4407297 Lja4g0538 4 4401312 4407297 ECH
Lja4g0538 4 4401312 4407297 Lja1g4411 1 57238488 57244112 PCT